Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public

If you have questions about the server, please let us know.

Query: PF09426.10; G8BMX6_TETPH/6-177; Vacuolar R-SNARE Nyv1 N terminal, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170
# Score Template Links and tools%idFirst VSYVEVIQDNRAISSCFYQDNANVNYGSIIHDDNVDNNFREPAESPSAVELMATPNMFHKLINDVVVPNVVPVLGNKVTKVSMHILDGYDCYYTTSDTLNGSITKDTKLFVCINKITVPKILPIRLLSELKQLAESNDEGGEPLSFDTDEELSLKVGGIIDQFREDLISYRNLast
1 -121.000PF09426.10; G8BMX6_TETPH/6-177; Vacuolar R-SNARE Nyv1 N terminal  ali  100  1VSYVEVIQDNRAISSCFYQDNANVNYGSIIHDDNVDNNFREPAESPSAVELMATPNMFHKLINDVVVPNVVPVLGNKVTKVSMHILDGYDCYYTTSDTLNGSITKDTKLFVCINKITVPKILPIRLLSELKQLAESNDEGGEPLSFDTDEELSLKVGGIIDQFREDLISYRN 172
2 -8.280PF03764.18; EFGM_YEAST/541-661; Elongation factor G, domain IV  ali follow..  19  3VSYRESITIPADFDYTHKKQSGGAGYGRVIGTLSPVDDITKGNIFETAIVGGRIPDKYLAACGKGFEEVCEKLIGHRVLDVKMLINDG.................................................................................... 93
3 -7.380PF09496.10; C5GN29_AJEDR/145-364; Cenp-O kinetochore centromere component  ali follow..  14  33........................................................................................VKPYYLLLKRVGGPEKKFLQVH----RHTIPIFVPLTQLEQRYLSVPRGTNGADSAIAKSRKAPKQDLRSLVRELRQELVAW.. 110
4 -7.090PF03834.14; M2UV18_COCH5/58-171; Binding domain of DNA repair protein Ercc1 (rad10/Swi10)  ali follow..  10  46.........................................................YHRLHPEYIYNRIRDLKGQYTLRILLTMVDIENHEDPLRELSKTSLVNNVTVMLCWSAQEAGRYL.................................................. 110
5 -6.480PF02807.15; Q4CRC5_TRYCC/21-87; ATP:guanido phosphotransferase, N-terminal domain  ali follow..  20  4..........................................................HSLLKKYLTKEVFDQLKGKQTKMGATLMDVIQSGVENLDSGIGVYAPDAESYTVFAALFDPII................................................... 66
6 -6.440PF05528.11; NS5B_IBVB/1-82; Coronavirus gene 5 protein  ali follow..  17  8.......................................................................PFRGAIARKARIYLREGLDCVYFLNKAGQAEPCPACTSLVCEEHIHNNNLLSWQAVKQLEKQTPQRQS................................. 80
7 -6.250PF05078.12; U5FZ36_POPTR/66-228; Protein of unknown function (DUF679 topsan)  ali follow..  13  54...........SFSDSFRDKKGNVCYGLATFRGLWVIDGSATIPPEVAANYRLRFIDFMHALMSILVFAAIALFDQNVVD----------CFYPSPSTKAQEVLTALPVGIGALCSMLFIVFPTK............................................... 157
8 -5.950PF06904.12; J7Q4I5_METSZ/39-221; Extensin-like protein C-terminus  ali follow..  11  46............................................NATATLDCSMVAELDAWLADTVQPAAQARFGQQVVQINS--MGSYACRGMNNQRGAQLSEHSFGNALDIGGFALADGREITLVRDWGRGDPQTRAFLMDVHRGACGRFSTVLSPGSNAFHYNHIHV.. 169
9 -5.940PF03967.13; W0E6J6_MARPU/3-139; Photosynthetic reaction centre, H-chain N-terminal region  ali follow..  14  4TEYIDVAQ----AGLIYYLRQEDKREGYPLDSDRTERS--GGRVKVVGFPGLPAPKTFKAPETNLKAKPVAPFLGAPIEPIGDPMTAGVGSSPNREKHPDLTEDGR------------PKIVPLRV.............................................. 137
10 -5.870PF16036.5; E1SQV6_FERBD/20-185; Chalcone isomerase-like  ali follow..  11  4.............................................................VAGVKLDPSLTIQGESLNYYGAGIRSFMKLYVGSLYAQQAGLDADGIL-----ASDKITAVRLNILSGMITMIDTIEEGFDTATDGNVAPLRERLDRFMAVFDAPV..... 109

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.