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Query: PF09566.10; F4KPK0_HALH1/1-281; SacI restriction endonuclease, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NIIRAEAEKVLLAAFRTRCSKKDYISSNIVVLRGNHKTYKYILVNGLLAKATNENINPLALQAGASIEGAYDARSLCHNVLVPFERDFLQNALGGSNEPFLNKPARFTHLSDRNAVRRGRDKETLELVIKIFESIPTSANHYLTCALEFLAQKIEEYEGETLAIVAAIEKIYYQKLTQNYKVVAHKVNQSGASSKEVGDIDVYKDDNFYYAIEVKDKNFTSYDLEHAFKKIQDAGGMKGQFIFGPLast
1 -110.000PF09566.10; F4KPK0_HALH1/1-281; SacI restriction endonuclease  ali  100  1NIIRAEAEKVLLAAFRTRCSKKDYISSNIVVLRGNHKTYKYILVNGLLAKATNENINPLALQAGASIEGAYDARSLCHNVLVPFERDFLQNALGGSNEPFLNKPARFTHLSDRNAVRRGRDKETLELVIKIFESIPTSANHYLTCALEFLAQKIEEYEGETLAIVAAIEKIYYQKLTQNYKVVAHKVNQSGASSKEVGDIDVYKDDNFYYAIEVKDKNFTSYDLEHAFKKIQDAGGMKGQFIFGP 245
2 -9.050PF06319.12; B9JXY8_AGRVS/33-180; DNA repair protein MmcB-like  ali follow..  14  7.............................................................................................................................................................DGRQSERALMIRRGTQLLLDQMRHAVLPELSLASGRR----DLISVSDKGEIWITEIK---SSIEDFRVDRKWPDYRQHCDRLFFATL 88
3 -7.370PF01870.18; HJC_ARCFU/7-99; Archaeal holliday junction resolvase (hjc)  ali follow..  23  17.......................................................................................................................................................................................AIRVAGSGVSPFPCPDIVAGNGRTYL-AIEVKMRKLSADEVEQLVTFARGFGAEAYVAL... 79
4 -7.210PF13588.6; A6LB16_PARD8/35-144; Type I restriction enzyme R protein N terminus (HSDR_N)  ali follow..  12  5...................................................................................................................................................................VRQHFVNYLVTEKNYPQELLANEVAVKLNGTSKRCDTVAYNFLAPLMIIEYKHIEITSAVFDQIVRYNMVLHVKYLTVSNG. 88
5 -6.850PF18154.1; D9T7X5_MICAI/257-375; REase associating with pPIWI_RE  ali follow..  21  28......................................................................................................................................................................................................DLRITLPNRQVWAIDVKDRA-NPALLGHSATRFRPEPPYNRAFLVVP 73
6 -6.750PF04471.12; Q3HKJ3_RHOS4/149-268; Restriction endonuclease  ali follow..  13  23.........................................................................................................................................................................................DVELGPGRGDEGVDIRLIQRDPIVTLVQAKGNKIDQTQVAALYGIQQSEDANFSMFVT.. 87
7 -6.570PF04313.14; O52272_LACLL/15-204; Type I restriction enzyme R protein N terminus (HSDR_N)  ali follow..  12  45..........................................................................................................................KEFKQVKVEFSRLTGTPFLASQWLRGENGVAQVLLEREDGKKVTLEAFRNKDISGGTSSYEVVHQVVPDSSRVDRGDVSLLINGLPIIHIELK-KESAKDGFMQAYYQIQRYAEDGFF..... 161
8 -6.490PF07788.11; A1RZX6_THEPD/171-239; PD-(D/E)XK nuclease superfamily  ali follow..  19  4......................................................................................................................................................................................................EVDVAVKDGEHILIEVKSS-VSRGDVAVFRRIGKVNRVKPRLIMVSP 53
9 -6.180PF03485.16; SYRC_DROME/81-171; Arginyl tRNA synthetase N terminal domain  ali follow..  3....................................................................................................................................................................LESVFRQAIASAFPEFRDTPVIIAPVNSTSAKFGDYQCNNAMGLSKKLKEKGINKAPRDITELKGHCPASPIIEKLEIAGA 84
10 -6.120PF08735.10; D5XA72_THEPJ/62-310; Putative pyruvate format-lyase activating enzyme (DUF1786 topsan)  ali follow..  11  6...........................CVGAIRRHLNAGLAVYATPDAALTINDDLKVEITANPPAHVREIAMRDIDLEALQKALACFDVELPQGEAIGQSNREFRFQQWRKFIERGGALEDLAYFDIPFPFTRMRAVQRDLPGALLM---------DTGSAAIWGALCDPEVAAAAETGITI---VNIGNQHTVGV----LIKGKRIFGLFEHHTRILDGQAVMEYVRKLQAGTLTHKIVVTGP 246

FFAS is supported by the NIH grant R01-GM087218-01
1 4 1 5 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.