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Query: PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AQPKSLLKPEDAGVLHSWLAAKREDAGFTAGVEHTANKLEQIIDKELEQRGAEQDPGFDISGLSTRMAALLSQAIVLMSALRTADNALSTKLSLVSFDATKATAASMVREGIANLSSSIVQSVGQVAITGVGAKKSLNGLNAERGALKNNAPKLGKLGDEGRNVQATLSRQNTVKLAADADGLKQVGLKPQNGAARPEVAELSAQPNAAASVADGMAGDKISLQSSNSKLARQHEAALGSSTEDLTAKSQAEQLAMDDTKLKAQAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASSRVASTASEETRESSRKADSIIQELLRTLEGISQSKSLast
1 -92.900PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)  ali  100  1AQPKSLLKPEDAGVLHSWLAAKREDAGFTAGVEHTANKLEQIIDKELEQRGAEQDPGFDISGLSTRMAALLSQAIVLMSALRTADNALSTKLSLVSFDATKATAASMVREGIANLSSSIVQSVGQVAITGVGAKKSLNGLNAERGALKNNAPKLGKLGDEGRNVQATLSRQNTVKLAADADGLKQVGLKPQNGAARPEVAELSAQPNAAASVADGMAGDKISLQSSNSKLARQHEAALGSSTEDLTAKSQAEQLAMDDTKLKAQAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASSRVASTASEETRESSRKADSIIQELLRTLEGISQSKS 342
2 -25.600PF05844.12; O68699_YERPE/13-306; YopD protein  ali follow..  12  65.............................................................GDLNGTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILN----SNIAGREQLIDTKMQQMSNIGDKAVSREDIGRI----------------------------------------------------------KPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHT 284
3 -16.600PF03532.13; O50963_BORBU/3-255; OMS28 porin  ali follow..  23.............................................................................DSNNANILKPQSNVLEHSDQKDNKKLDQKDQVNQALDTINKVTEDVSS----------KLEGVRESSLELVESN-----DAGVVKKFVGSMSLMSDVAKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKAVSVAGEATFLIEKQIMLNKSPNNKELELTKEEFAKVEQVKETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNV-VKVAQGARDLTKVMAISL................... 252
4 -11.600PF00015.21; MCPC_SALTY/326-483; Methyl-accepting chemotaxis protein (MCP) signalling domain  ali follow..  17  46.................................................................................................................................................................................................AFQTNILALNAAVEAARAGEQGRGFAV--VAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDS.................................... 156
5 -9.920PF11098.8; A1BIR5_CHLPD/1-139; Chlorosome envelope protein C  ali follow..  10  13...............................................................................................................................................................................................................KELDFTDRLTFLAESVLMTGQGAVVGGLELAGSVVETVAGTVGSLIDATGIGAMLGRTGGVVGETIDRVAITVKDVSRSAGE---LYSDAVKNVDNVTDNAARAIGDAGVSASEAVRNIAGSFQKTTVK...... 138
6 -9.190PF03207.13; H7C7Q2_BORBU/1-254; Borrelia outer surface protein D (OspD)  ali follow..  13  87......................................................................................................................................................................................................................................ANKVVEAVINAVNLISSAADQVKSATKNMHDLAQMAEIDLEKIKNSSDKAIFASNLAKEAYSLTKAAEQNMQKLQQKISESESESDYSDSAEIKQAKEAVEIAWKATVEAKD 201
7 -7.600PF05802.11; C5B9R0_EDWI9/34-192; Enterobacterial EspB protein  ali follow..  16  25......................................................................................................................................................................................................................................QAQQSNAFKMQKTAFETRVDSIDKDFQAKQAQA----GFGEHGHTISTGLNNMTQGIVGVGYANSQEEQALSDYQHGMADQLLKRAEETKEKALKVSGDLREILATLTQ... 148
8 -7.530PF15605.6; B5HEJ1_STRE2/135-247; Bacterial toxin 28  ali follow..  1....................................................................................................................................................................................................................................GLSDEAMNAINKLENIKADPIGRINSEPNHNHYSAARREAAGEVVARRPD-VKDLTQAQQGLENVRRILWKEMERLPDGMTERGLEVLLKKHDETVYHLDRVKGFLHQ...... 113
9 -7.370PF06009.12; LAMA_DROME/2566-2700; Laminin Domain II  ali follow..  11  1.......................................................................................................................................................................................................................................................SNANASDALEILKNVLEILEPVSVQTPKELEKAHGINRDLDLTNKDVSQANKQLDDVEGSVAEDIEEQQHRVGSQSRQLGQEIENLKAQVEAARQ 101
10 -7.260PF04849.13; W5LGB1_ASTMX/38-342; HAP1 N-terminal conserved region  ali follow..  10  75............................................................................................................KERDLELAARIGQSLLK----------QNKALTERNELLDEQLEIARE--SMRDELLNLYASTEEIESAMESRSPIRRNESSSSLTNYIHYDFLQQKLKGLEEENLKLRTEADELTSETTIYEEQEQQLMMVCVEELSSVNKQVVDLSEELARKVEDSLRQQEEISSLLGQVVDLQQRCKGLMRENEELTQHL-SATRENQSQLKTELKDLQERNSESEDMLQEAREEIKNLRN 304

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.