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Query: PF09730.9; H3DKP7_TETNG/4-712; Microtubule-associated protein Bicaudal-D, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GQAYTNHRKVAADGESREESLIQESACKEAYYEQRVLELQNDLRQARNLVANAQSENDRQNALSQEIKDHSQMVELQRNQLRDDIKEYKLLEARLLQDYTELEEENITLQKQVSVLKQSQVEFEGLKHEIRRLEEDTQFLNSQLEDAIRLKEIAERQLGEALETIKTERELKASLRKELSHYMNIGDALYNSPLSISLDGLKFSEEAATEPNNDEALLGYENGFTKLANAINYDNCVSTPKKELFPPAPSLVDDLLSELNISEIQKLKQQLMQMEREKVNLLTTLQDSQKQLEQANGALSEHQDKVNRLTENLNAIRKLQASKERQSALDNEKERDSHEDGDYYEVDINGPEILECKYKVAVSEAGELKEELKTLKAEYQACQSRYEDDRARLENDVTTLGEKLASLEKTSHVDREEKNKLETELRKLRDVAGESQGSLSVAQDELVTFSEELATLYNHVCMCNNETPNRVMLDFYKEGKGGRSSPEGRGRRSPILLTKGLFPEPGKTDLSDRAPSPVSSLPSPVSDHRREPMNIYNLVAIIRDQIKHLQLAVDRTTELSRQRVASLELGTVADKDKEACMEEILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNELKGLKEDAATFSSLRAMFATRCDEYVMQLEEMQRQLTAAEDEKKTLNSLLRMAIQQKLALTQRLEDLEFLast
1 -209.000PF09730.9; H3DKP7_TETNG/4-712; Microtubule-associated protein Bicaudal-D  ali  100  1GQAYTNHRKVAADGESREESLIQESACKEAYYEQRVLELQNDLRQARNLVANAQSENDRQNALSQEIKDHSQMVELQRNQLRDDIKEYKLLEARLLQDYTELEEENITLQKQVSVLKQSQVEFEGLKHEIRRLEEDTQFLNSQLEDAIRLKEIAERQLGEALETIKTERELKASLRKELSHYMNIGDALYNSPLSISLDGLKFSEEAATEPNNDEALLGYENGFTKLANAINYDNCVSTPKKELFPPAPSLVDDLLSELNISEIQKLKQQLMQMEREKVNLLTTLQDSQKQLEQANGALSEHQDKVNRLTENLNAIRKLQASKERQSALDNEKERDSHEDGDYYEVDINGPEILECKYKVAVSEAGELKEELKTLKAEYQACQSRYEDDRARLENDVTTLGEKLASLEKTSHVDREEKNKLETELRKLRDVAGESQGSLSVAQDELVTFSEELATLYNHVCMCNNETPNRVMLDFYKEGKGGRSSPEGRGRRSPILLTKGLFPEPGKTDLSDRAPSPVSSLPSPVSDHRREPMNIYNLVAIIRDQIKHLQLAVDRTTELSRQRVASLELGTVADKDKEACMEEILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNELKGLKEDAATFSSLRAMFATRCDEYVMQLEEMQRQLTAAEDEKKTLNSLLRMAIQQKLALTQRLEDLEF 709
2 -13.700PF15921.5; G5BJQ7_HETGA/1-1111; Coiled-coil domain-containing protein 158  ali follow..  14  287...KASSARSQANSIQSQLEIIQEQARNQNSMYMHLSELESTVSQLRSELREAKRMYE----------DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ---LQKLLADLHKREKELSLEKEQNKRLWDRDMGNSITIDHL-------RRELDDRNMEVQRLEALLKTMKSECQGQMEQQMA----------------------------------------------------AIQGKNESLEKVSSLTAQLESTELTAKKMTLENSERTVSDLTASLQEKERAIEATNSEITKLRSRVDLKLQELQHLKTEEEHLQHAQTECEALRLQMAGKDKVIEILRQQIENMMQLVGQHGRTAGAILVEKAQLEKEIN-----------DRRLELQEFKVLKDKKDAKIRELEAKVSDLELEKVKLVNAGSERLRAVRDIKQERDQLLNEVKNSRSELNNLSEDY----------------------------------------EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGADGHAVKVA------------------------VGMQKQITAKRGQIDALQSKIQFLEEAMTNANKE-KHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD-QRQEQESVRLKLQHTL-----VKELQ. 850
3 -13.300PF12128.8; Q8EAA0_SHEON/8-1195; Protein of unknown function (DUF3584 topsan)  ali follow..  11  247.....................LEQEFNQLLSAEMRLSSLSRGYRNDESLEADRLEIQTLSKELNLKLRMLDDEWKEVRDELNLDLSAAKGDVAKCEYELDAIEDQHGAFLDAIEQAKADLDMLPNWRADMENLSERHKLQTEKHQDI-------EAAYNARRSKIGEQLNRELEGLHSEQDKQREARDKQREVARGDLDALEAQWRSQMDAGKASFSEQEY------------QFKLNAAELKLRVDGVTYTEEEKLNLAIFDIHRADEEQESCNAKVERLTSDERKLRAKRDQANEALRIASLRVNERQTALDELHHMLFPQSHT---RKEAQGWEQSLGKVIAPELLHRTDLHPSVTGESDTVFGVNLDLKAID------VPEYAASEQELRIRLSKAEEALQSAQELQAEAESQLVAINGELDKLSRELTFARTAYKNSRDDLRRLFDEKRSEQDKI----------------------------------------------------------------NKALAERKAFAQQRLTQLDGELKQLKHQHQLWLEEQKEQALEAR------------MEKQAYWQEVIGALDNQLGQIKATIDARRESAKAEQKACETWYKKSRGVDEDNILKLKQQIRELETKISRAEQYQHTWLIRKPKLQTQLSDVKRAASEIDQQRQQLETERKASDAAQIEASENLTKLR. 863
4 -12.400PF10174.9; H2T771_TAKRU/113-856; RIM-binding protein of the cytomatrix active zone  ali follow..  13  212..................QAVIDMKDTKISSLERNIRDLEDEVQMLKTSGLLQPDDRQDELKQVEVYKSHSKFMKMKIEQLKQELNKKESEMQALQTKLETLTNQNSDCKQHIDVLKE---SFSAKEQRANTLQTEVDALRVRLEEK-------EQFLTKKTKQLQDLTDEKSTLTGEI-----------------------------------------------------------------------------RDLK-DMLDVKERKVNVLQKKIENLLEQLKDKDKQLAGLRERVQGFQTDSSNTDTALATLE---------------------------------------------EALSEKERVIENLREQKEREDRTRLEELDQMRKENQELKDKLTALQPPKELKEFSLVDLMCSSQAVFTLLTSTPIKDLDVWSHHKSAAMKNSGLIGIL-TQNTEEATRKCADITDRLRLLEQEVARNREDSRKSKAEVERLMLALREAEMEKLSKEKKIADLESIAYTLFHLKREGLHVLSKDNS---WFKKAQGTEEKAKLGLNLFSGSLLEQLEELMGALEKTRQELDTTKLHLSSTQQSLHER----DRHLNSLHQ----DRRKQLQEILEMKQQLAAISEKDANIALLE-LSSSKRKKAQEEVMALKR-------EKDRLMHQLKQQTQSRMKL......... 744
5 -10.700PF05622.12; H2QW41_PANTR/12-710; HOOK protein  ali follow..  10  237....QTQLEQLQEETFRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADEAQSLKDEI-DVLRHSSDKVSKLEGQVESYKKKLEDLGDLRRQV----KLLEEKNTMYMQNTVSLEEELRKANAARSQLETYKRQVVELQNRLSEESKKADKLDKRLKEKVDSLQKEKDRLRTERDSLKETI------------------------------EELRCVQAQEGQLTTQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQ-HENKMLKLNQEGSDNEKIALQSLLDDANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDSVLLKKKLEEHLEKLHEANNELQKKRAIIEDLEPRFNNSSLKIEELQEALRKKEEEMKQMEERYKKYLEKAKSVIRTLDPKQNQGAPEIQALKNQLQERDRLFHSLEKEYEKTKSQREMEEKYIVSAWYNM......................................................................................................................................................................................................................................................... 661
6 -10.300PF05557.13; G3PW04_GASAC/52-714; Mitotic checkpoint protein  ali follow..  12  1.........................AAEKVQSKNRYLQLDQEKRQMELSHKRARYELER---AASDSARDFEHEVDRNQDLLGRIKKLEERETEEAKNLSEQVEV--KVEERDTRLNTANQTISSLKDEIRELKQKIQNQDSAVSSHTLENQELQEHLDLQRRKYQEVSQLCQSLQAAQSSCSEHII----------------------------------------------TIKELERRLALQEQDFAIVKNIKSEV--ARVPDLERDLKRLREDNAFLRESRENCS--LKEEVEGLRKKLERTERTKEELVNMELEKERVAEKLRAWETIGQSTGLNIRKPEDLSREVIHIQQIEISLKEQNYTLNSRVRSAERSQA-----------ELRAELSKQRGRTQEEQKKREAQDALVRRLQKRVLLLTKERDGMRAILESYDGELAPAEYS---------PQLSKRLREAEEVLQRTQKHNVEMEGQLTKAQEEAGTLKLQLHAVELEMESLRKQQASAGDGSSSETKEEVSILRQKIEDLEAERQSLEQQNNVLEMRLERHNLQGDYDPVK---------RVLHLKM--QQRQQDGEALR---EEVTRLRE-VVRSDESGLSLPPPKEVLGSFLCNHNLVNLRKQMESNQRLKEVFQRKIQEFRTVCYVL--QIDITTENQYRLTSLYAEHMDDSLLFK........ 613
7 -10.200PF09726.9; H2MT57_ORYLA/2-679; Macoilin family  ali follow..  13  333....AALNSSPRGHSTTNGSVAFSASSSTTNTAKNDKKHKLPVGKGTAGGSHKDPADNWIPNNQLSKPEALVRLEQDIKKLKADLQASRQVEQ--------------DLRSQISSLGSAE---RSIRTELGQLRQENELLQNKLHNAVQAKQKDKQTVGQLEKKLKGEQEARATAEKQLAEKKLEEATAARAVALAAASRGECTDTLRRRITELETECKKLTMDIKLKEDQIRELEIKVQELHKYKENEKDTEVLMSALSAMQDKTLENSLSAETRIKLDLFSALGDAKRQLEIAQGQMIQKDQEIKDLKQKIAEVMAV...................................................................................................................................................................................................................................................................................................................................................................................................... 636
8 -8.710PF05701.11; W5B560_WHEAT/161-725; Weak chloroplast movement under blue light  ali follow..  13  35......................ERRKFIQLELQKEIPKCKEELEAAEMAKSQVLDELETTKRIVEELKHELEKAQMEEVQAKQDSELAQLRVQEIERGVADDSSVIAKTQ-----MEVAKERHEKSVAELKSVKEELRTLHEEYASLVNERDRAIKRAEEVLAAGKDIEKRVEGLTVELIA----------------------------------------------------------------------AKGSLELAHAAHHDAEERRVLAKEQDCLAWDRELVQAQEEVQQLNNKLLSQNDLKKNLEANLRKLHGLKSELADYVESILCKEALGVAKEHESEDARQISSSIKETLASTQKELEEVKANIENTKTEAKLLRV----AATTLRSELDREKASLDSLQQREVMASIAVSSLEAELNRTQKEIESVRSKEEDAQEKMVELPKMLQQA-------------------------------------------------------------------------------------------------------AQEAEDAKDAAQAAEEELRKAKEDTEQTKAAATTTSSRLCAVLKEIEASKASERLALAAVRALNESKETLPISEYYALSKKAQDAEE-TEALAQVESVKGSE-LESLDRLTEATKEMDEKKRTLELALERAERANEGKLAAEQQLR.... 556
9 -8.060PF05911.11; W1PWE2_AMBTC/32-946; Filament-like plant protein, long coiled-coil  ali follow..  14  6.KQHSKVAEEAIAGWEKAEA-LDGVVRQKVAAEERIVQLDAALKECTRQLRHVREEQEE--RIHDAIMKTTRDMDKVRIEIEEKLSETSKRLIQVTADNNQLHKALQVQEKLIEEISERKSQAEALKYEVCMLEKELEIRNEEREYNLKSSEASRKQLESMKKIAKLEME-RLLVRKRLPGPAA------LAQMKNEVENLGRDAFDQRKKKWNASHGSALIVRDYSLSDDA------------------------QEAANKRISILTERLWEMEEETKILKETLTKKNSELQSSRTMCARTVSKLSQVEAQLGVFLKGENCLE................................................................................................................................................................................................................................................................................................................................................................................................. 325
10 -8.040PF00429.19; ENV_MLVHO/20-637; ENV polyprotein (coat polyprotein)  ali follow..  13  406................................................................................................................................................................................................................................................................................................................................................................................................................................................................LSTAVLNLTTDYCVLVELWPRVTYHSLDFVYRQVEGRTRYQREPVSLTLALLLGGLTMGGIAAGVGTGTS--------------------ALVKTQQFEQLHAAIQADLK---------------------------EVESSITNLEKSLTSLSEVVLQNRRGLDLLFLELKEEYADHTGLVRDSMAKLRERLNQRQKLFEAGQGFEGLFNR---PWLTTL----------------ISTIMGPLIILLLILM........ 604
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.