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Query: PF09769.9; E9DTQ5_METAQ/98-227; Apolipoprotein O, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst KEKKPRGPSPTDRLAVQIGKVRMALYRFAVCTENKVNETMDSAFNLEQSFTNTIASLAPSRESGEKLMPGTIYVLVAAMAGSILTRNRNILLRSTVPLAFGVGAGWTVLPVTMRNISDLSWKYEQRFPAILast
1 -75.200PF09769.9; E9DTQ5_METAQ/98-227; Apolipoprotein O  ali  100  1KEKKPRGPSPTDRLAVQIGKVRMALYRFAVCTENKVNETMDSAFNLEQSFTNTIASLAPSRESGEKLMPGTIYVLVAAMAGSILTRNRNILLRSTVPLAFGVGAGWTVLPVTMRNISDLSWKYEQRFPAI 130
2 -9.680PF05957.13; Q9HZG8_PSEAE/12-109; Bacterial protein of unknown function (DUF883 topsan)  ali follow..  12  12ADTEKLLQSTADVAGDQAEEIRGKIHDSLKRARDTLRDTKDSLKDNVRERSQAAVDATEVYVGEHPWQSIGIAAGVGFLLGLLVSRR........................................... 98
3 -7.250PF02466.19; TIM22_CRYNJ/52-172; Tim17/Tim22/Tim23/Pmp24 family  ali follow..  10  40..................TTTRAQTMFVFKEMGRNMWSSGRGF-AKVGMVYSGVECCIEGYRAKNDIY----GVSAGFLTGAILARNAGPTAMLGGGVAFAAFS.......................... 121
4 -6.250PF08938.10; S8BFX7_PENO1/14-86; HBS1 N-terminus  ali follow..  14  12.....PDPEEQEFLQQCTASVQAELRAGQPSVTATTQEIHDALWHYYNDIEKSVNYLRGKKEKEMK................................................................ 72
5 -6.240PF08372.10; Q5TKJ0_ORYSJ/649-804; Plant phosphoribosyltransferase C-terminal  ali follow..  10  20.......PRHPPYMDTKLCHAEFTNPDELDEEFDSFPSSRDRLRSVGGRVQTVVGDLATQGERAHALLPRATAIFIFLSLVVAIV--------YVTPFQVLLVIAMLYLPRFRSRMPSVPFNFYRRLPA. 150
6 -6.070PF07978.13; Q7VX89_BORPE/3-102; NIPSNAP  ali follow..  7  2..EERDYRIKPGKAGLFVATYEAHGLALQKKYLGRFLGYFMSEIGELNHVV-AYDSLDERDAARSRMLADPQWQAYLERVTDLIDLQQT---RILKPVSFS--------P.................... 100
7 -6.060PF07096.11; Q7PVW6_ANOGA/1-123; Protein of unknown function (DUF1358 topsan)  ali follow..  14  46....................................................SKAIMSAKKSDPKYFDKGLHGSLALHEAGTSLALRALGWGTLYAILGTGTICFGIWKLSGAKNMEEFRQAVGSAFPRV 123
8 -6.010PF17153.4; F0JX08_ESCFE/24-139; Periplasmic sensor domain, extracellular  ali follow..  12  1.....VSDRAIKNAENRFELIEKNIGYFFNDIERDALTLKDSLYMLRR-----EDEIIRAALLKMESMPYLDTIGLVMDNGKYLLFTR.......................................... 78
9 -5.910PF01544.18; Q6F7P3_ACIAD/50-358; CorA-like Mg2+ transporter protein  ali follow..  10  176............QQEDVLGKAQLCLIDLRRVLTFLARPRALGSHIYDADIRELSEDVRSLVEHDAFLFQKVRFLLDTTSG--FINTEQNDTIRRF------SILPSMLAPPML--VASIYGMNTQELPFA 283
10 -5.790PF05884.12; A0A2H2IWJ2_CAEJA/19-303; Interactor of ZYG-11  ali follow..  13  18HLAVNTMQKFGRELEQFPIESKKLMEQVLSSVASTRGSRSEASQDSFVRIVNTIADISPSKLPSKAIIE-SSVVLTAFSLSALLGG--APFVTLIVPPVGAAIFSGLVAP.................... 139
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.