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Query: PF10034.9; H9G3T3_ANOCA/57-723; Q-cell neuroblast polarisation, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ISLAILTSVYVATLHENDLWVSNIKEVEREISFRTECGLYYSYYKQMLQAPSIQHTGIHGLISDNKTESMRTINILERMNVYQEVFLSILYTVFQVKNFLEPVYFYIYTVFGLQSVYVIALYVTSWLLSGTWLSGVLAAFWYITNRIDTTRVEFTIPLRENWALPFFAVQTAAITFLLRTHLRPTHEKLTLTALFISTSLFSLAWQFNQFMLLIQALVLFTLDCLDLLPSKKVTWIYVIQVASLLLVCVLQFFNSMIVGSLLISFNMSALLARKLQETMGTPGCYTILWEASLMSPHGKLVHILLVLSLTFLGNNFIKKVLNLESDEHIFKFLKAKFGFGATRDFDANLYLCEEAFGLLPFNTFMRLSDSLVFYPYIFVVVVMTITAAAVAFQNLSGSANVRYAERQQKWPTQLKPGVAYNLGHTILFGLLALSTMRMKYLWTSHICVFAASGLCSSDMWGLVLRFLHLYTPQRVSVIRYLTPILILLYLCYKFWPGVMAELSELREFYDPDTVELMNWIKSSTPKKAVIAGSMQLLAGVKLCTGRVLTNHPHYEDKSLRERTKQVYQVYAKRSPEDVHRILRSFGTDFVILEDSICYERRHNRGCRLRDLLDIANGHTMDGPGENDPDLKPSPYPRFCEEIKRNLPSYTKYFTKAFQNKTFHVYKLLast
1 -226.000PF10034.9; H9G3T3_ANOCA/57-723; Q-cell neuroblast polarisation  ali  100  1ISLAILTSVYVATLHENDLWVSNIKEVEREISFRTECGLYYSYYKQMLQAPSIQHTGIHGLISDNKTESMRTINILERMNVYQEVFLSILYTVFQVKNFLEPVYFYIYTVFGLQSVYVIALYVTSWLLSGTWLSGVLAAFWYITNRIDTTRVEFTIPLRENWALPFFAVQTAAITFLLRTHLRPTHEKLTLTALFISTSLFSLAWQFNQFMLLIQALVLFTLDCLDLLPSKKVTWIYVIQVASLLLVCVLQFFNSMIVGSLLISFNMSALLARKLQETMGTPGCYTILWEASLMSPHGKLVHILLVLSLTFLGNNFIKKVLNLESDEHIFKFLKAKFGFGATRDFDANLYLCEEAFGLLPFNTFMRLSDSLVFYPYIFVVVVMTITAAAVAFQNLSGSANVRYAERQQKWPTQLKPGVAYNLGHTILFGLLALSTMRMKYLWTSHICVFAASGLCSSDMWGLVLRFLHLYTPQRVSVIRYLTPILILLYLCYKFWPGVMAELSELREFYDPDTVELMNWIKSSTPKKAVIAGSMQLLAGVKLCTGRVLTNHPHYEDKSLRERTKQVYQVYAKRSPEDVHRILRSFGTDFVILEDSICYERRHNRGCRLRDLLDIANGHTMDGPGENDPDLKPSPYPRFCEEIKRNLPSYTKYFTKAFQNKTFHVYKL 667
2 -26.300PF02516.14; STT3_SCHPO/23-509; Oligosaccharyl transferase STT3 subunit  ali follow..  11  2LKVLILICIAVASVSSRLFSVIRYESIIHE----FDPWFNFRASKILVEQGFYN----FLNWFDERSWYPLGRVAGGTLYPGLMVTSGIIFKVLHLLRINVNIRDVCVLL-AFSGITAIATYYLARELKSD-ACGLLAAAFMGIAPGYTSRSVAGSYDNEAIAITLLMSTFALWIKAVKSGSSF-----WGACTGLLYFYMVTAWGGYVFITNMIPLHVFVLLLMGRYTSKLYIAYTTYYVIGTLASMQVPFVGFQPVSTSEHMSALGVFGLLQLFAFYNYVKGLVSSKQFQILIRFALVCLVGLATVVLFALSSTGVIAPWTGRFYSLWD-IIASVSEHQPPTWSSLFFDLQ---------------------FLIWLLPVGVYLCFK-----------------------ELRNEHVFIIIYSVLGTYFCGVMVRLVLTLTPCVCIAAAVAIST-----------------------------LLDTYMGPEVEEDKVSEEAASAKSKNKKGIFSILSFFTSGSKNIGIYSLLSRVLVISSTAYFLIMHSSW--------TSNAYS................................................................................................... 487
3 -9.310PF10131.9; R5JZI7_9CLOT/75-690; 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein  ali follow..  1..............................................................................FRYWGPLYIMAGLMFLTSGDLLLAYRLIAFVIFVVGGLP----WILWGIHENRRVLGTFFGVLWFFMPEHIRIYFTAGNLPQMVTTMLVPYVIWFLWLYVRKKNNR-----AAVGLFVCMTLMSFTHLMVTAIMGVSAFLYLLIDQIWNKDTRRKIFALIYMICGILTAWVIPSLKGGLVTSESGDGSVMSTLIYPLTTSLNPFKRLSAGNDSFYFGLAAVLIAIAGILLAAGFVFLLIMLACTTPAAYRILVKLPFSQ------FWMTRFAPMVYGFFFSACLEWVRLKKKYCVLLAALLCVDSISCMNLDFYSVATSDETKMEMQQLTELTDQRTAVIDKSSYGSYPSYGISGSSHTMYTY------AWQGAETGDNIVLLNEALDRKYYRFLFDRAVELGADTVLIRKSDLEKQDITISDIEQDAAASGYSMVQEMT-FGTVTGYYGLAIGKYANEPAFVAGNSDMI---EDYSVEELSRYDTLFLTGFEYRNQSKAEAILTDVGTRVVI............................................................................ 520
4 -8.350PF09852.9; Q10XG3_TRIEI/32-516; Predicted membrane protein (DUF2079 topsan)  ali follow..  10  1............................RYYSFYADQGIFNQVFWNSMHGHSSLSSALSTNVVHQGQVSEVYYHRLGQHFTPALLLWLPIYVLFP-----YPITLTVLQVTLI-SVSGLVLYILARQHLQPQLSAMMSISFYGANAVIGPTLA------ICQIPLFVFSLLLAMEK-----------------------------WWSLFWILAVLT---------------------------------------LAVREDSGVVLFGVGFYLILSKRY--------------PKIGLAICTLSFSYMIALTNLIMPVFSEDISQRFMMERFGQYTEGDQASTLEIIWGMMSNPWRLIKEIFTPFFGTLKYLLGQWLPLAFVPA----------------------------VAPAAWMIAGFPLLKLFSA-ITIRYAMTVVPGLFYGAILWWGKRESEVKNSPVPSPKFLRFWVVCICLSLFFTFTSNPNRTFPDSVKPWVYIPANEQWQHVSQMRPLLDKIPDDASVAATTYII--------------PHLSS---RRAILRFPRMQFRNDAKKIEK------VQYIIVD---------------------LWRLNRYRVAFKSDRQRLETIVPRIEELYNSGE-----YGITDFGDGVVL... 485
5 -8.210PF15238.6; G1KYC8_ANOCA/2-303; FAM181  ali follow..  11  1............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ADSEVKTLLNFVNL-------------ASSDIKAALDKSAVDHRKY----LQKQLKRFSQKYARLPRCHHHHHPHHMQQPSSLRERKAELEGKSRGLNTSESPEASEGRVAVVATTSASILAQSDKACK.............................. 117
6 -6.910PF03782.17; F6WA41_MONDO/231-371; AMOP domain  ali follow..  1...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ASAKCLHWAALD-KGLPNFLEEIE----------------PCTLAQARADT--GRFFADYGCDIEQNSVCTYHPEAVHCVRSIQASPRYASGQQCCYSAQVLTRDTSSGSTPDRGHDWGSPPYGPPRVPGLSHWLNDVITFYYCCLWSDNCLSY.. 140
7 -6.750PF07301.11; C6D5Y5_PAESJ/11-155; Protein of unknown function (DUF1453 topsan)  ali follow..  14  12.....................................................................................LTLIVLRMRAGKQPTNLRKIIAPPLGMSTGFMMFATHIHWLWGLSAFGTGLLIFSFPLIVTTRLERVESDIFVRRSKAFIFIMLTLLAIRLALHSVVEQYMSIPQTALFYLLAFGMILPWRFAMVG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 141
8 -6.680PF10060.9; I0I741_CALAS/47-643; Uncharacterized membrane protein (DUF2298 topsan)  ali follow..  10  24LALIGVAIISVVAGRRKPGALAFSALPSLRYILLFELLFLGAFA-AADHTEQPMDLMMHSIRASLTYPPHDAWLAGYPISYY-YWLMNMVGLMAG----QSAAVAYNLSQAVWFGLLLSGAFGIGYNLVAALGGGWVATLLVGLSWWRSSRVLADVSIDESYAMPFAMLAVAAALVIFLQNSSSNFSSFLLVAVITGSLLFLNTWDYPPYWLLTTFSIAVG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 346
9 -6.640PF16881.5; LIPA_SCHJY/7-112; N-terminal domain of lipoyl synthase of Radical_SAM family  ali follow..  15  31..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ASGPKFSDFLKGDKEEQLKPEEAYELEENVVLPNGSVHKRLPSW----LKTKVPL-------TNFNKIKNDLRGLNL-HTVCEEARC...................................................................... 106
10 -6.620PF09586.10; Q839W8_ENTFA/19-846; Bacterial membrane protein YfhO  ali follow..  10  6FLIMAIIYLSIGIYPGSSRSVLASDAFSQFSNF-------HASFNNVLHGKQSLNASL-------------GLNYLSLISYYLGGLFTPLVFFFNNQNMPDALYFLTLLKIGSAGLSFW--FLAKQTFKIPKWSHVTLSVSYALMSFIVAHSELIMWLDAFIYLPLVILGI----RLMDQRKP-------TLLFVSYFLLFITNYYFGFMIGLFSFLYYFARTFTDWQRYSRIVAYFTTSLLAGGASMIMVLPAVLDLRTNGETLSEITTFKTEATAFLDIIMKNMIGVYDTTKYGSIPFIYIGLLPLIFCLFYFVTKEVPLKNKLLFGSLFVLLIASFY-ITPLNLFWHGMH-------------APNMFLFRYSFLFSFLVILLAGYGWEKFEKDDLGV------------------LSGLILILLAIFALAMGTKGATSYTYVTLTSFVLTATFLLLYFFGIAFYQLKKAPMQYLVILLLLLVSGEAIINTRAMVTGILDDWNSEPYPDLKNLVDQTKKENDTFYRLENLNGVSANDGINYGYSGISM--FSSV-RNRHSSTYLNALGFRSRGTNLNIRYQMGIKYNIAE----------------------------------------------------NNPMKFGFERQAAAGKYQLYR. 573

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.