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Query: PF10100.9; H6NF63_9BACL/6-429; Staphylopine dehydrogenase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NRVLILGTGPASVQLAVTLKNKWNCCIGIAGRESVRSEPFFTALDESGRRVRADIQNEKHQAMQGECIVDHVFQGYGTITGEWDTLILAVTTDAYVAVLKQIHGELLKRVRCMLLLSPTFGSNRLVRHYMNGIQSSAEIISFSTYSCATRWAGPRPSHQVITTAVKKKVFIGSTHGRSPAIESLCGLYEKLGTTLEVMDSPMEAESRNISLYVHPPLFMNEISLGAVFGEDVTQKYVYKMFPEGPITQYLIRDMLAAWKEMMSILEQLHFEGINLLKFMTDDNYPVRLESLSRHDIEHFTELETIHQEYLLYIRYTSLLIDPFSEPDQEGRYFDFSAVPIRSIFVDREGYWDIPRMPKEDYYRIKIIQGIARHLNVSCPTIDKFISAYEGKLEAVAQARKGELLSDAFVIQDFAEDVKMICHEMLast
1 -106.000PF10100.9; H6NF63_9BACL/6-429; Staphylopine dehydrogenase  ali  100  1NRVLILGTGPASVQLAVTLKNKWNCCIGIAGRESVRSEPFFTALDESGRRVRADIQNEKHQAMQGECIVDHVFQGYGTITGEWDTLILAVTTDAYVAVLKQIHGELLKRVRCMLLLSPTFGSNRLVRHYMNGIQSSAEIISFSTYSCATRWAGPRPSHQVITTAVKKKVFIGSTHGRSPAIESLCGLYEKLGTTLEVMDSPMEAESRNISLYVHPPLFMNEISLGAVFGEDVTQKYVYKMFPEGPITQYLIRDMLAAWKEMMSILEQLHFEGINLLKFMTDDNYPVRLESLSRHDIEHFTELETIHQEYLLYIRYTSLLIDPFSEPDQEGRYFDFSAVPIRSIFVDREGYWDIPRMPKEDYYRIKIIQGIARHLNVSCPTIDKFISAYEGKLEAVAQARKGELLSDAFVIQDFAEDVKMICHEM 424
2 -41.200PF02317.17; Q0C9A1_ASPTN/215-362; NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain  ali follow..  13  2.....................................................................................................................................................................................................CKSLLQVGLANIGPVIHPATAL--MNAGWIEATQGD----FHFYGQG-MSPSVSRVIQRLDEERMAIARAYGFDVPSLLETLE-RDYKLGFTEFHQ-FARGSKIHNKTKGA-----------------PTNLQHRYVREDIAY----------------------VLVPWYELGLKCGLSSPTIKAIVDVASVI................................. 147
3 -21.600PF02558.16; Q9K9R6_BACHD/6-154; Ketopantoate reductase PanE/ApbA  ali follow..  14  1..VAVIGSGSIGLLLYAYLKLANW-PALLVTNRPEQAD----HLNKEGLTFVAKSGEHQPISVT-------ATPLSSFSAEEAEVGFITVKSFAVKALLPQLQRK---KWDGLVFFQNGMTHLEILRQI....................................................................................................................................................................................................................................................................................................... 112
4 -21.000PF01210.23; GPDA_COXBU/7-162; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus  ali follow..  16  1.PIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVDEMQAE-GVNNRYLPNYPFPETL----------KAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLA...................................................................................................................................................................................................................................................................... 149
5 -18.100PF10727.9; Q743Y6_MYCPA/8-128; Rossmann-like domain  ali follow..  11  6.KVGIISAGRVGTALGVALERADHVVVACSAISHASRQRAQRRLPDT------------------------PVATPPEVAAGAELLLLAVPDSELAGLVSGLAATEAVRAGTIVAHTSGANGVGILAPLTRQ.................................................................................................................................................................................................................................................................................................... 112
6 -16.400PF03807.17; Q21544_CAEEL/2-98; NADP oxidoreductase coenzyme F420-dependent  ali follow..  19  1.KIGFIGAGKMAQALARGLINSGRIT-NIIASSPKRDEVFLDQCKALGL---------------------NTTHDNAEVVQKSDVVFLAVKPVHVSKVASEIAPALSKEHLVVSIALG.................................................................................................................................................................................................................................................................................................................. 97
7 -13.000PF07991.12; ILVC_METAC/15-178; Acetohydroxy acid isomeroreductase, NADPH-binding domain  ali follow..  10  4KTIAIMGYGSQGHAHARNLHESGL-NVVVGLRKGSSSWAKAES--------------------------GLKVMTVEEAAKAADVIMILLPDEKQASVYYSQIEPSLEAGNALVFAHG.................................................................................................................................................................................................................................................................................................................. 95
8 -11.500PF01488.20; HEM1_PSEAE/169-304; Shikimate / quinate 5-dehydrogenase  ali follow..  13  13SQALLIGAGETITLVARHLFEQGVKRIVVANRTLERASLLAEQFGAHAVLL----------------------SEIPEELANSDIVISSTASQLPILGKGAVERALKQRKHKPMFM.................................................................................................................................................................................................................................................................................................................... 106
9 -11.400PF03721.14; UGDH_CAEEL/10-205; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain  ali follow..  9  1SKVVCVGAGYVGGPTCAMIAHKCPHTVTVVDMNTAK----IAEWNSDKLPIYEPGLDEIVFAARGRNLF--FSSDIPKAIAEADLIFISVNTKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSN-----EFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVR........................................................................................................................................................................................................................................... 195
10 -11.000PF00056.23; MDH_CHLAA/3-142; lactate/malate dehydrogenase, NAD binding domain  ali follow..  8  1KKISIIGAGFVGSTTAHWLAAKELGDIVLLDFVEGVPQ--------------GKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAKVNADITRACISQAAPPNAVIIMVNN.................................................................................................................................................................................................................................................................................................................. 118
11 -10.900PF01118.24; DHAS_YEAST/6-132; Semialdehyde dehydrogenase, NAD binding domain  ali follow..  11  2..AGVLGAGSVGQRFILLLANHPHFELKVLGASS----------RSAGKKYVDAVNWKQTDLLPESATDIIVSECKSEFFKECDIVFSGLDA----DYAGAIEKEFMEAGIAIVSNAKNYRREQDVPLIVPVVNPE................................................................................................................................................................................................................................................................................................ 122
12 -10.500PF13450.6; B4RE46_PHEZH/425-493; NAD(P)-binding Rossmann-like domain  ali follow..  22  1....IVGAGFAGSVLAERLTSQLGKRVLLVDRRPHVGGNAYDEKDAGG........................................................................................................................................................................................................................................................................................................................................................................................ 44
13 -9.990PF01408.22; YEAH_SCHPO/36-187; Oxidoreductase family, NAD-binding Rossmann fold  ali follow..  9  2.KCAIFGCGGINFG-SQKLELVLGHRLQVVALLSPHKSSHERVLKQKA-----------ETEYASSYANTREFYSADEYLEKPDAYIIGIPPETHGSTQKELAILKRFPDASLFIEKPISAAPVEDAFAVARRLPSESVISVG......................................................................................................................................................................................................................................................................................... 151
14 -9.780PF03446.15; Q8FTI1_COREF/15-184; NAD binding domain of 6-phosphogluconate dehydrogenase  ali follow..  11  1.QIGVVGLAVMGSNLARNFARNGH-TVAVYNRSTDKTDKLISDYATDGNFIPTKTVEDFVAALEKPRRAIVMVQAGAATDAVINQLIIIDGGNALYTDTVCREKEMAARGRHFV-ISGGEEGAL............................................................................................................................................................................................................................................................................................................ 132
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]