Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF10618.9; VPM_HAEIN/2-116; Phage tail tube protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst ATQFQGSAIIRLNGKEWPSDNDGTLTPGGKERETVKGSRVYGFSEKPTEAMVECTVFNCAETDVMELQNITNATVEFETDIGQVYLLPGAWTVETGTLSADGKIKLKMASIECKRLast
1 -64.500PF10618.9; VPM_HAEIN/2-116; Phage tail tube protein  ali  100  1ATQFQGSAIIRLNGKEWPSDNDGTLTPGGKERETVKGSRVYGFSEKPTEAMVECTVFNCAETDVMELQNITNATVEFETDIGQVYLLPGAWTVETGTLSADGKIKLKMASIECKR 115
2 -6.800PF16862.5; H6C5V5_EXODN/418-542; Glycosyl hydrolase family 79 C-terminal beta domain  ali follow..  12  60.................................................KGIRVQRLLANGSDAITGITFDGSSYNYELDAGRPVLLNNVTRGEVLQVDEEGVVTVDVPWSSA.. 123
3 -6.360PF03642.13; Q2FWW1_STAA8/51-138; MAP domain  ali follow..  11  4........AITVNGTSQNILSSLTFNKNQNISYKDLED------------RVKSVLKSDRGISDIDLRLSKQAKYTVYFKNGTKKVID........................... 71
4 -6.360PF00419.20; Q8ZS05_SALTY/188-334; Fimbrial protein  ali follow..  9  2...YSGTVTVP----EINAGQTILVNFGALYSGNFNHAGQKPEGVRAKKFSVPVKCSGLDSQVNLTMRDNADVGVVVETDEGNALIPNDVQSVAPFITDSAGRANITLQAYPVST 127
5 -6.120PF08768.11; D1A4L3_THECD/8-159; Domain of unknown function (DUF1794 topsan)  ali follow..  18  25SFRFGQEISFTHNGKPFLIYSSRTWLLDEDGNLGQPLAVETGYWRPQPNNEVEVTLAHPTGVVEIYIGTVAFNRVELRTDV-RLYGLIGEDLGWAYDMAAMGQSLQSHVSAQLKR 152
6 -5.990PF12956.7; R5UHF8_9BACE/2-242; Domain of Unknown Function with PDB structure  ali follow..  13  28....VGNVDIEKGGPALEVGSNSILVAESYNEEDYVLDTLAQYPGDPTLGKLTFMINLKNQSGTREVAEFSVLTMSLGYKDGNYPVESQIPVYTSADATASYAIKLRLKGE.... 139
7 -5.780PF05481.12; A0A139V3S0_MYCPH/24-138; Mycobacterium 19 kDa lipoprotein antigen  ali follow..  11  1AALGGTTAKVTIDGESTGGPLPVRCAQSGWLWTIKSLDEKQGFT-------VDLDTGDDVVVQAITFQGVGGFTGSVWRDAGGTFTITGS-ADGSFADNPSNAVSTTFR...... 110
8 -5.520PF05359.11; A4VPN2_PSEU5/551-698; Domain of Unknown Function (DUF748 topsan)  ali follow..  12  33.......LNGDIGVLSNREQKAASVNIAGKVDQPVSIKGSLTPFDPLQSLDIATSF---RQVELTTLTPYSGKFAGYRIRKGRL--LDLHYRIEQGRLNAENKVVLE........ 130
9 -5.300PF17248.2; X4ZEP5_9BACL/28-177; Family of unknown function (DUF5317 topsan)  ali follow..  10  66...FLNFLVMAVNGGKMPVSLDAAKVLDPYYVHLLESGTVATKDSATRLSFLGDIIPLSKPYPRTQVISIGDIVMNA----GIFLYLQ........................... 150
10 -5.130PF18597.1; I3ITL5_DANRE/7-58; Myosin X N-terminal SH3 domain  ali follow..  16  4....................................................RVWVNHKDQLLPSTVNSCGDGNLVLTTDYGEVVYLQQAEVNRE.................... 46
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;