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Query: PF10912.8; YKO8_CAEEL/16-160; Protein of unknown function (DUF2700 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst PARPLVVGLAVFGAIRSFVQFWMSSGFGMAGTHFCVLLLDLLLLFGAYKNDVFALKWSQRVTFACVLIAIIRFMIYPVVFASYMASGLSRNFTGIDSEEIEILGNVTTPEQNFVFGMISGFTLEFATALSIGVESLKYLLVHRLWLast
1 -96.600PF10912.8; YKO8_CAEEL/16-160; Protein of unknown function (DUF2700 topsan)  ali  100  1PARPLVVGLAVFGAIRSFVQFWMSSGFGMAGTHFCVLLLDLLLLFGAYKNDVFALKWSQRVTFACVLIAIIRFMIYPVVFASYMASGLSRNFTGIDSEEIEILGNVTTPEQNFVFGMISGFTLEFATALSIGVESLKYLLVHRLW 145
2 -10.100PF04544.12; UL20_PSHV1/59-243; Herpesvirus egress protein UL20  ali follow..  7  33.AKIICCLFLLWAKSCTGHGAMVTGLTACTGAYAIASLLCSFVVYYNVRTDNMPFGTYTKLFQIAACIGCGCYALGLTMEKLFGDSEMYFALFPDAKNSPLVGATAKGSALILPQGCSVAPYVPLAVSVAYCAAVV--TIFPLLW 179
3 -7.870PF03547.18; PIN6_ARATH/9-565; Membrane transport protein  ali follow..  11  414.SRNPNTYSSLLGLVWSLISFKWNIPMPNIVDFSIKIISDAMFSLGLFMALQPKMIPCGAKKA--TMGMLIRFISGPLFMAGASLL----GLRGSRLHAAIVQAALPQGIVPFVFAREYNLHPDLLSTLVIFGMIVSLPVTILYY 557
4 -7.780PF06459.12; M3ZZY1_XIPMA/4218-4479; Ryanodine Receptor TM 4-6  ali follow..  7  161...........................................ILNYLARNFYNLRFLALFVCFAINFILLFYKVTGEAEEEEEDEEHRWDEEDDENTLFDMDEFVLQESTGYMLPTLRFLAV-ISLLCLVGYYCLKVPLV.... 261
5 -7.670PF07852.11; A8E2L2_BPPHE/42-173; Protein of unknown function (DUF1642 topsan)  ali follow..  18  5..........................................................................IVPKFVAEWYEE-LDGNSYPHESEFDCWLDQSKNNPIETLIRMKDGYEVEKEPLYHVVFT........... 78
6 -6.860PF11240.8; A5VKT7_LACRD/1-54; Protein of unknown function (DUF3042 topsan)  ali follow..  17  3...............................................................................................................QLAKGILVGSLATVAAIASGVLTFHKTVI..... 31
7 -6.720PF11200.8; A7AQJ9_BABBO/2-370; Protein of unknown function (DUF2981 topsan)  ali follow..  10  4.....LFYIAIQQFLLGISLYSVIHYLHPSLTQLAWLLFGVLGFMGALKRNIVMECVYLVFYAISLFLIFLTVLDMAELVHLLPRGPQLKDVSDFASIRSAALPSTALMRSN................................. 116
8 -6.680PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  15  12PRRPLALLLLLLALL--IVMSDWTGGALLVLYSFALMLIIIILIIFIFRRDLLCPLGALCILLLMITLLLIAL-IVLFIFGCLLVLGIW-------IYLLEMLWRLGATIWQLLAFFLAFFLDLILLIIALYLQQNWWLLVDLLW 173
9 -6.490PF08536.11; M0RK35_MUSAM/200-335; Whirly transcription factor  ali follow..  9  31.......................................GFILLQFAPAGATRQYDWSRKQVFSLSVVEVGHLMLGAKDSCEFFHDPFKGRSDEGKVRKVLKAEPLPDGTGHFFNLSVQNRLLNVDESIYIPITKAEFSILN... 134
10 -6.470PF05029.13; TOF1_EMENI/643-1167; Timeless protein C terminal region  ali follow..  10  1.....................YFYRIAFKQEMTVLLFRVDILNLFYRIIKGPGGMDSSKPIELVRQLIR--PALITELLFSKINSTAFYLEYGFEKQTVTTSKRAPAELEVDPKAASTPEEKLSIVVAALVQSALVKWIS..... 134
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.