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Query: PF10988.8; Q82V75_NITEU/79-237; Putative auto-transporter adhesin, head GIN domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PYTSLVLSGAFNTEIKTSSENRVIISGDSNYVESVEVNSSDGELIIRRPGPGNDNLNVIVESISLQKLKISGAGSTNIYGDFPDGLSVRKSGAGSINIEGQASTLKLNLSGAGNTTARDFTVDNVEIDATGAGNIAVCAKKSVAGSLAGAVHFKVYCNPLast
1 -65.200PF10988.8; Q82V75_NITEU/79-237; Putative auto-transporter adhesin, head GIN domain  ali  100  1PYTSLVLSGAFNTEIKTSSENRVIISGDSNYVESVEVNSSDGELIIRRPGPGNDNLNVIVESISLQKLKISGAGSTNIYGDFPDGLSVRKSGAGSINIEGQASTLKLNLSGAGNTTARDFTVDNVEIDATGAGNIAVCAKKSVAGSLAGAVHFKVYCNP 159
2 -7.720PF13349.6; Q8Y9D1_LISMO/52-365; Putative adhesin  ali follow..  12  5...AFSSERDASIEWKESTTGKNYIEDKKAIQQLEPVSEDGTSFDITVPEEDDGKQKVTIYLTKLADLEVSHSGDIDVADFKVKKFVSS-TNSGELKVTNLEANTAQMATSSGDLTLSNIKANSSIETDSGSGDVNVAGVKAKKLKIIDSGDIELT... 196
3 -6.670PF11175.8; D3EAW2_GEOS4/84-343; Protein of unknown function (DUF2961 topsan)  ali follow..  16  6......................LRMYWDDEKTPSVEVPLGDNSLPIVVNPVGGMNSYFAMPFKKAARVTITNEHPQEIEAFFYQFDYVLVDELPE-TQLGQDYTIIDGIKGRGKYIGTYMAWTSLSRYWYGEGEVKFYLDGDQEPTICGTGAEDYFGG. 167
4 -6.440PF08949.10; P5_BPPRD/122-340; Domain of unknown function (DUF1860 topsan)  ali follow..  16  31.......................................................................GESLLDTTSEPGKILVKRISGGSGITVTDYGDQVEIEASGGGGGGGGVTDALSLMYSTSTGGPASIAANALTDFDLSGALTVNSVGT. 117
5 -6.290PF13502.6; E6WGF8_PANSA/1014-1257; AsmA-like C-terminal region  ali follow..  11  87QPSEPTLSGTLKSHFGKGQIADVNTGRAGQLLRLMSFDALLRKLRFDFSDTFSQGFFF----------SINGTAWIENGVMHTDNLLVD-GLEADIAMQGKVDLVKREIDMEAVVASASVGVATAFVINPVVGAAVFAASKVLGPLWSKISLLRYH... 235
6 -6.270PF05504.11; C6D3H9_PAESJ/220-385; Spore germination B3/ GerAC like, C-terminal  ali follow..  11  17.........................EKESRGYTDITNNLDSTSIAVPCGEQRYLGVEVTSSDSKIKTKVVNGNPEVEV----------------SIRTEGNIVERTCTDVDLSDPATIKKLEGQTKQAIQGNVEAAVLRAKELKSDIFGFGTQMEKEHP 134
7 -6.190PF14819.6; QUEF_RALSO/15-126; Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term  ali follow..  13  6...........................DPSLLFPIPRQAKRDEIGLAAGSALPFFGIDLWNLYELSWLNLKGKPQVAI-------GTVIVPADSPNIVESKSFKLYLNTFNQTKVASSEALQQLIHHDLSEACGAPVQVR................... 111
8 -6.140PF01987.17; B1L4K3_KORCO/3-207; Mitochondrial biogenesis AIM24  ali follow..  11  83................................DIEKLTLDGRGYIIQRSSYVASDPTVELDIKWQGFTKGIFGQGL---------FMIKTSGRGNLFINTFGAIDRHELSAGESLIVDN-DTCSYEVRRMGGLKELALSGEGLVVEVRGPGEVLIQTK. 205
9 -6.050PF14059.6; F4AWQ4_DOKS4/29-180; Domain of unknown function (DUF4251 topsan)  ali follow..  9  84..........................................................................................NSSNGVEFSGIPKSFEITKDKKTDRTEITFSISEVFIEFFNTKKVQISVNSVQRTSIRYDGFM...... 152
10 -6.050PF09203.11; K0F8H9_9NOCA/29-198; MspA  ali follow..  16  32.................SVKGAVSIEGEGR------APVNAAAVQIGLQLGCQIDVSTGLTAGLGLNVGVNGVVTVSQYPSGLVGGNAGVNPSVSGTLKGGITQLVLSLNGA----YGSIATREAEMKVDAGGPVSVRSVVTVSLATTSTDSFSVYGDP 169
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.