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Query: PF11221.8; A5E6W9_LODEL/1-184; Subunit 21 of Mediator complex, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDRLTQLQICLDQLIDQFTATVNYINVHAPPALLDDDPTSVSNRAAKALPPQGLPGQPGQAGQQLPQDQQLPPAQQQENGKEKEQDAAQAKSQAATQVSLEDNENEFNTAIEELSTDIVLKSRQISILIDSLPGIGVSSEDQLKQIGELYNELKEVEQKRLLKIKEKDELIKNVDDLIVELASLast
1 -72.000PF11221.8; A5E6W9_LODEL/1-184; Subunit 21 of Mediator complex  ali  100  1MSDRLTQLQICLDQLIDQFTATVNYINVHAPPALLDDDPTSVSNRAAKALPPQGLPGQPGQAGQQLPQDQQLPPAQQQENGKEKEQDAAQAKSQAATQVSLEDNENEFNTAIEELSTDIVLKSRQISILIDSLPGIGVSSEDQLKQIGELYNELKEVEQKRLLKIKEKDELIKNVDDLIVELAS 184
2 -6.950PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)  ali follow..  10  264.............................................................................................................QAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASSRASTASEETRESSRKADSIIQELLRTLEGISQ 339
3 -6.880PF07889.12; B6TRT4_MAIZE/96-218; Protein of unknown function (DUF1664 topsan)  ali follow..  6  28........................................................................................................SDLMYVTKRNMANAVSSMTKHLEQVQSSLAAAKRHLTQRIEKLDDKLDQQKALSGQIRDDVTDARLKLENIGSEIKNIKE 107
4 -6.710PF10018.9; Q2M0F9_DROPS/39-211; Vitamin-D-receptor interacting Mediator subunit 4  ali follow..  9  1................................................................................................................GDLLDLLVAKDEEFRKMLELA----EEQAKVEDAMDKLRAKVEVHDREIQKLQKSLKDAELILSTAIFQ... 65
5 -6.240PF15070.6; W5MC41_LEPOC/402-1036; Putative golgin subfamily A member 2-like protein 5  ali follow..  11  2LMESVQQLKTERDQYAAQLQEEGKVWKDR------------------TEQLLSQVNSLSEEKERSMTQIQELENLVIELRNASALLSQEREDQAAPEPTGPSENETALQEALGKLQQEKDDLSTQYQAQVRDNEQLSRLCQEQEERLLELERTVQ----RFSEDAVDRQQILESMQS....... 156
6 -6.210PF14703.6; Q756H9_ASHGO/204-380; Cytosolic domain of 10TM putative phosphate transporter  ali follow..  16  1..........................................................................................................................SRTV--LFQSVPEQYLSETEFSKLFVGVKR------SDLGSKVAERDNVAMQLEAAATSYLR 61
7 -6.050PF10805.8; Q8EDR8_SHEON/3-97; Protein of unknown function (DUF2730 topsan)  ali follow..  18  28............................................................................................................TYAKREDLAKVEKKVDELKAQVDSLPTQKQMSDLMIE-LANTRGEIKELRANIQPVEHLARLLLEQR......... 93
8 -5.980PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain  ali follow..  17  1............................................................................................KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLDEIMG 92
9 -5.950PF03915.13; G4UU16_NEUT9/619-1087; Actin interacting protein 3  ali follow..  13  252.........................................................................................................DDLQDLIEDLRKDVVHRPNQLESVTKDITTLTKELKKMEEFMKKEKPIWTKIWEKELEEVCQGRDELRLMEDLMIDLRD 335
10 -5.890PF10436.9; A8Q5Z3_MALGO/25-287; Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase  ali follow..  13  28................................................................................................................EELPVRFAHRVKDLQELLSDMPSIIKVKNWYAQSFDELHLPDSLQRKLLKSTVSDTLEPAPATPNPSLEENA 108
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;