current user: public
If you have questions about the server, please let us know.

Query: PF11328.8; Q8YAI8_LISMO/1-90; Protein of unknown function (DUF3130 topsan, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst MSEIKVKEATLAKYATKLESKGKSTEYLPMKGGNMSYSQANSINHFRTALFDLVDAVDNFQGVVGTDAKRLKELGASFTRKDQELERSMGLast
1 -43.500PF11328.8; Q8YAI8_LISMO/1-90; Protein of unknown function (DUF3130 topsan  ali  100  1MSEIKVKEATLAKYATKLESKGKSTEYLPMKGGNMSYSQANSINHFRTALFDLVDAVDNFQGVVGTDAKRLKELGASFTRKDQELERSMG 90
2 -17.100PF17279.2; YXIC_BACSU/2-87; Family of unknown function (DUF5344 topsan)  ali follow..  12  2.QEIKMVYDTVKQGLSQLKNSAE---KSSLPGHLSGRNHLNVVKSIEQLNKDIKELTEAYASVLAKHIAQTESAVNAMKETDENISSS.. 86
3 -10.500PF06013.12; A8FGZ8_BACP2/4-89; Proteins of 100 residues with WXG  ali follow..  13  2...IRVTPEELRATAKQYGVESQEVLNQVDRLNRMISDEGASSEAFADQYEQLKPSFIKMSDLLTDVSNQLDQTANTLESTDQ....... 86
4 -9.750PF10824.8; Q5Z2J0_NOCFA/9-106; Excreted virulence factor EspC, type VII ESX diderm  ali follow..  12  3.TTLFVVPEKVGEVGKYLYELAQALQAALDSAAQDVSSTGDHATDFANAWADLRTSGDQIMAALTELAEKLGVTAHTYQARDENNAGAIQ 97
5 -9.370PF10817.8; Y2078_MYCTU/1-104; Protein of unknown function (DUF2563 topsan)  ali follow..  12  1...MFVDVELLHSGANESHYAGEHAHG---GADQLSRGPLLS-DAVGAAHAQQMRNLHAHRQALITVGEKARHAATGFTDMDDGNAAEL. 95
6 -6.420PF18625.1; B2HT33_MYCMM/12-88; ESX-1 secreted protein B PE domain  ali follow..  7  1...............NEILARADELDTNPPSDPVKAACGLETAVTGAKQIKLSADNLRTRLAVGAQEAEFMRSAAKAYEDVDEQ...... 76
7 -6.080PF05816.11; R7IKK7_9FIRM/77-404; Toxic anion resistance protein (TelA)  ali follow..  9  255.................LKKNAETLKMSTIETAKESERGIIDIETLVQTNQSLIDTISEVMTIQQEGHTKRVEAEKTLYQMENDLKKKL. 326
8 -5.960PF04088.13; R9P1Y0_PSEHS/134-268; Peroxin 13, N-terminal region  ali follow..  6  7................................ESGTQATFELISSIVGAFGGFAQMLESTFMATHSSFFAMVGVADQFASLRNYLGQVLS 64
9 -5.950PF05659.11; D7LTF3_ARALL/4-143; Arabidopsis broad-spectrum mildew resistance protein RPW8  ali follow..  12  20IQRAKDRSLTTSCILDRLDSTILRIAKVEKLGKESDESMRKVIKDLKHLLEKAVVLVEAYAELKRRNLVGKYRYKRRIKELEGSLKW... 110
10 -5.950PF15237.6; M3ZD55_XIPMA/28-261; PTRF/SDPR family  ali follow..  10  17IDNVQSCQQRMEERQLELENNIKTIQGDVLKLAKDHSDTSGTVEKLLQKTRKVSANVKEVRTRVEKQNIRVKKV................ 90
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;