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Query: PF11460.8; K9V6A0_9CYAN/1-96; Protein of unknown function (DUF3007 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst MRRIDALGITLGVFVAGGLLYLGFQVSGLDSQSAGIWSQALLVAGLIGWLVTYIFRAVGNKMTYHEQRRKYEDAFLQKRLDEMTPEELAQIQAEIELast
1 -59.200PF11460.8; K9V6A0_9CYAN/1-96; Protein of unknown function (DUF3007 topsan)  ali  100  1MRRIDALGITLGVFVAGGLLYLGFQVSGLDSQSAGIWSQALLVAGLIGWLVTYIFRAVGNKMTYHEQRRKYEDAFLQKRLDEMTPEELAQIQAEIE 96
2 -11.200PF03250.14; G1T4H0_RABIT/5-146; Tropomodulin  ali follow..  21  1...............................................................FRKDLEKYKDLDEDELLGNLSEVELKQLETVLD 33
3 -8.590PF12301.8; G3N6P2_GASAC/29-223; CD99 antigen like protein 2  ali follow..  20  140.............................VGTIAGIASA--VAMALVGAVSSY-ISYQKKKLCFGLQQSLNADMVKTENPEAVVATE......... 194
4 -6.850PF10332.9; F9X9T6_ZYMTI/167-271; Protein of unknown function (DUF2418 topsan)  ali follow..  18  52....................................AFSALLSLQLWFLKASFSQQAKDSALVHGEVMNEYDTKFVRPILNRPVRD.......... 101
5 -6.730PF18198.1; F0YN37_AURAN/3933-4102; Dynein heavy chain AAA lid domain  ali follow..  17  44...........................................YGKIGWNVNYDFNESDFQIS-RKLLSLYLKKAFEDEDEFLPWGSLKYLIGDAM 95
6 -6.510PF06799.11; Q8YPM3_NOSS1/9-151; Conserved in the green lineage and diatoms 27  ali follow..  15  43.....SWLVAGPVAAASFPPNKQLTHFLLCGAAGASVGVVLSLVRLLGW--LYVRDRLYSMTVFYEESGWYDGQTWIKPQEVLTRDRL........ 124
7 -6.470PF12161.8; Q11QY1_CYTH3/9-149; HsdM N-terminal domain  ali follow..  25  1.................................................LVSFIWSIADDCLRDVYVRGKYRDVILPRRLDALLEPTKDAVLEEMA 51
8 -6.410PF12578.8; M3YI62_MUSPF/565-696; Myotubularin-associated protein  ali follow..  14  70..................................GVLLPHLSGTHVKLWKLCYFRWVPEAQINLGGFITAFEVDVLSRTLRQQRAGPLE....... 132
9 -6.040PF04799.13; Q28FR9_XENTR/575-735; fzo-like conserved region  ali follow..  15  22................................SMSVIIVGGVIWRTVGW-GLYLYERLTKERAFKKQFVNYAAQKLKLIVSFTSANCSQQVQKELD 100
10 -6.040PF15275.6; H0UWC9_CAVPO/796-914; PEHE domain  ali follow..  11  1...........................................ILTPSW------RMAVDECNLGEEVEDLSDDVFSLRHKIYEEREQTRWSLWEQ 51
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;