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Query: PF11486.8; Q65MK1_BACLD/1-121; Protein of unknown function (DUF3212 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MYYFSPEQQYNAWIISDLVKQIFSREGHQEADTHRFESFAARRFGINIDYVFSIIMNIGDPEERRTASSTEDLLSSYLLSLLSFITKDMFQYSRENANQYLLNERNADVFHLFLPDSVLKKLast
1 -98.700PF11486.8; Q65MK1_BACLD/1-121; Protein of unknown function (DUF3212 topsan)  ali  100  1MYYFSPEQQYNAWIISDLVKQIFSREGHQEADTHRFESFAARRFGINIDYVFSIIMNIGDPEERRTASSTEDLLSSYLLSLLSFITKDMFQYSRENANQYLLNERNADVFHLFLPDSVLKK 121
2 -7.970PF16017.5; W4ZCZ0_STRPU/17-122; BTB/POZ domain  ali follow..  9  2.....................................................VTLIVENTRFVVDPSLFIAQPNTMLGRMFSNGVDHTMTRPNDKGEYEVAHGISAEIFSSIL....... 62
3 -6.180PF01397.21; W5BN22_WHEAT/19-190; Terpene synthase, N-terminal domain  ali follow..  17  61.YHFGEE-------IQELLHGMQVDEQSFGDDLHRFYLLRKHGYNVSPD----VFLKFRDDRGNFASNDVNSLLALYNAAYLRTRGEEVLDDAIIFTKSRLQC.................. 155
4 -5.910PF08416.13; EPS8_MOUSE/64-194; Phosphotyrosine-binding domain  ali follow..  15  1........QYRVEHLTTFVLDRKDAMITVEDGIRKLKLLDAKG------WTQDMILQVDDRAVSLIDLESKNELENFPLNTISHCQAVVHACSYDSILALVCKEPTQSKPHLFQCDEV... 108
5 -5.620PF14663.6; G8ZRB4_TORDC/940-1048; Rapamycin-insensitive companion of mTOR RasGEF_N domain  ali follow..  10  1........NLQRYVMDMLTRQLYDLSPKVVAAADQSLYDCMMVDECSQEIISSLLKQMVFIRSPLLFELLGTPHGFQLLNEINFIEAERKSWLESKNKEYVL................... 97
6 -5.610PF06736.11; J7LE88_NOCAA/5-90; Protein of unknown function (DUF1211 topsan)  ali follow..  21  1..................................RIEAFSDGVLAIVITI---MVLGLVQPEAATFESFFATTGLGLLSYLLSFVYVGIYWNNHHHMFQVADR.................. 66
7 -5.540PF10183.9; D4AAT2_RAT/19-139; ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)  ali follow..  14  85FVAYVPDYRMLEWAHREAMMLVKYREA.............................................................................................. 111
8 -5.490PF02152.18; R6BJB1_9FIRM/4-116; Dihydroneopterin aldolase  ali follow..  9  14..VYPEENKLGQKFVISADLSVDVRMAGLTDELEYSVNYGE---------VSHTIQDFLQKHTFKLIEAAAEGLAAELFCRYPLIRALRLEIQKPWA........................ 99
9 -5.460PF03920.15; Q4H3F0_CIOIN/1-129; Groucho/TLE N-terminal Q-rich domain  ali follow..  16  24................DRIKEDFS-QAHNHSLKMECEKLATEKTETQRQYVMYYEMSYGLNVEMHKQSEIAKRLGIICAQIIPLLSQE----HQQQVASAVERAKQVTMPEL......... 116
10 -5.440PF04895.12; D1YZL6_METPS/316-423; Archaeal Nre, C-terminal  ali follow..  18  44..YIMP---VGVWNVRENVRNALRGAYNSFNSLEAALTHIQGRFDIPIK........................................................................ 87
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.