current user: public

If you have questions about the server, please let us know.

Query: PF11841.8; W4Z9X2_STRPU/133-288; Domain of unknown function (DUF3361 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst TFAQDFISNHGIELLVKMVEEGSQNGEPLSLTLKSFIELMDHNVISWDSLSANYVKKIASFVNRSSGLDFQVTERALNILESSILNSTKLYNVIANEITFHNMTQHLENVQNPGIQQNCLALMNALCLKAPEDRKKRFEEALSARNIRVVIMEKIILast
1 -68.600PF11841.8; W4Z9X2_STRPU/133-288; Domain of unknown function (DUF3361 topsan)  ali  100  1TFAQDFISNHGIELLVKMVEEGSQNGEPLSLTLKSFIELMDHNVISWDSLSANYVKKIASFVNRSSGLDFQVTERALNILESSILNSTKLYNVIANEITFHNMTQHLENVQNPGIQQNCLALMNALCLKAPEDRKKRFEEALSARNIRVVIMEKII 156
2 -16.400PF06371.13; DIA_DROME/59-241; Diaphanous GTPase-binding Domain  ali follow..  97SWIKEFGVAGIGTIEKLLARNNASYEKIEFEAIRCLKAIMNNTWGLNVVLNPDQHSVVLLLAQSLDPRKPQTMCEALKLLASFC........................................................................ 182
3 -11.600PF17741.1; A0A151PBS4_ALLMI/1-268; Family of unknown function (DUF5578 topsan)  ali follow..  14  94RYLIEFLEVGGVLTLLEILGLSQLKEEDKKESIKLLQLVANAGRKYKELIESYGVRSIAEFMASSK--SEKAQRQVQILLDSLGHGNPKYQNQVYKG------LIALLPCTSPHAQQLSLQTLRVVQAIVGKSH...................... 220
4 -11.500PF17822.1; G3S7I6_GORGO/1-229; Family of unknown function (DUF5584 topsan)  ali follow..  12  92..PAGNFAAEYMEEVAHLLQDEELAPKIKILLLQSVACWCLNPVSQKRAKSLQFIPILISFFEGRFESTIKLKFWTCYVLSVMTCNNLSCVKELKDHSALKYHLQMLAAENWSGWTENFAEVLYFLI............................. 225
5 -11.300PF05804.12; KIFA3_HUMAN/13-720; Kinesin-associated protein (KAP)  ali follow..  525DWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQE-DDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLID-LMHDKNNEIRKVCDNTLDIIAEYDEEW-----AKKIQSEKFRWHNSQWL. 672
6 -10.500PF10508.9; A7SP09_NEMVE/2-505; Proteasome non-ATPase 26S subunit  ali follow..  12  127...........LSYIARGMADEHL--KNAQIASNVFTNLAKHEAGLKVLFDSHLQSEFNALLKTKDTVRMR----VYDMYITVQAHSPKAFDVCKESGIFEKLISEL-DGRDVLVQMNCLELLTKLASISPSG-----LEYLDQKGVVTKLNNLL. 258
7 -10.400PF04826.13; ARMX3_MOUSE/110-363; Armadillo-like  ali follow..  13  6...DTVLSPQELQKVLCLVEMSE-KPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKILNTR---DPIVKEKALIVLNNLSVNAENQRRLKVYMNQV--CDDTVTSRLNSSVQLAGLRLLTNMFSAGNEETKLQVLKLLLNLAENPAMTRELL 172
8 -10.100PF03224.14; VATH_ORYSJ/2-323; V-ATPase subunit H  ali follow..  13  200...ALFVQADGVKLLIPLISPASTQQSLLYETCLCIWLLSFYDAAVDYLSTTRVMPRLVEVVKGSTKEK--VVRVVIMSIRNLLAKGAFAAQMIDLGL--PHIVQNLKAQTDEDLLDALNQLEIGL.............................. 322
9 -9.780PF06367.16; Q16HS4_AEDAE/245-445; Diaphanous FH3 Domain  ali follow..  12  4................................................................................KKVLTAMLNYQEYAAERVRFQGIVNDLDKSTGVNLKTAIMSFINAVLNYGPGQERLHLRYEFLMLGIQPVIDKL.. 86
10 -9.730PF08045.11; E9DYC2_METAQ/1-287; Cell division control protein 14, SIN component  ali follow..  10  61...................PRKDLGELSQDPAFREFFKLQEGFEWNVAMRLIRTLDRLMAKGSDGQ--NDLLILSALDLIQGVLLLHPPSKTLFSREQNMNLLLDLLEPFNCPAIQSATLLTLVVALIDTPSN-----TRTFEGLDGLLTVTSLF. 189
11 -9.700PF11701.8; F6ZSU7_XENTR/243-434; Myosin-binding striated muscle assembly central  ali follow..  12  20NGMTLWVIDTGLKKILEVGGS-SVTESTRMSASVLLNKLFDD--LKCDAERENFHKLCEDYVRSLEGHGMDGKLRSIQTVSCLLQGPSEAGNRTLELTGIMESIISLCASEREIDQQVAVEALIYAAGKAK......................... 156

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 6 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.