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Query: PF11854.8; A1S4W3_SHEAM/64-698; Putative outer membrane beta-barrel porin, MtrB/PioB, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst WQDGENSHFANTTGTDADGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIKKPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQTAGTTAGMTRLQDAHTVKLEKKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKVYWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQFFEGAQQAIMRARFSHLTQDEPLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREFSVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDRTRQLLKLGAKYRFSRQWDLDTLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMPNQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPLTEHLLLNGFLGMDWRDTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLSLGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANYQLSDAMSLRIDWLYENYSDMDWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQWLast
1 -175.000PF11854.8; A1S4W3_SHEAM/64-698; Putative outer membrane beta-barrel porin, MtrB/PioB  ali  100  1WQDGENSHFANTTGTDADGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIKKPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQTAGTTAGMTRLQDAHTVKLEKKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKVYWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQFFEGAQQAIMRARFSHLTQDEPLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREFSVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDRTRQLLKLGAKYRFSRQWDLDTLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMPNQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPLTEHLLLNGFLGMDWRDTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLSLGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANYQLSDAMSLRIDWLYENYSDMDWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW 635
2 -21.900PF10082.9; Q1QI05_NITHX/173-566; Putative beta-barrel porin 2  ali follow..  10  44.........................................................................................................................................................................SPEFVAASDWERHALLVDLRGSFTGYGKT------FPPDIDSAGQPIVSPVPTNVDRPDFTGRVDGRLDVTHTRINSELRLRIGTDNPGSPNIQAGLERYP--------LYATTGGTAGIEHDFNRQLSLNGTADRTTYQNSR-----------LTDGTSTSNDDRDFNQYGAVARASYELLPGVKPFGEVEADTRVHDTRFDRDSNGGYAKVGSSFELTRLLTGEASIGYAAR------------------------------------------------------SYADP--RLNQLTGLLTDASLIWSATPLTTAKFISVTSVDESTLAGV------------SGVLTRTYTFEVDHDFRRWLTAIGRFTYGTRDYQ-----------SSRSDEIYSLSGDLVYKLTREFQIKAQVRRDILASN-------------------ISGASSASTVVMLGVRLQ. 393
3 -21.600PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein  ali follow..  10  16..................................................................................................................................................................................................................................................................................................................................................................................................................................................VAAGTPASAAEHQSTLSAGYLQTHTDMPG----SDDLNGINVKYRYEFTDTLGLITSFSYANAEGEQKTHYNDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYALAGVSYARVSSFAGDYVTLTSDEGKKQEHLTTYSAGVQINPTENIVVDLAYEASGRG-------------------------DWRTEAFIVGTGYRF 199
4 -20.700PF16946.5; B8K3G3_9VIBR/48-336; OMPG-porin 1 family  ali follow..  9  20................................................................................................................................................................................................................................................................................................................................................................HGTLGSNVEVERLIRDD-GVNEGKVKYTIAQGSFRHDDLPGWDFGFYSGREELFTGNLKHA----------DYNRGVNSIQEIYVNRSYNHEKGNIGWGLKLAGES--------DQRTTPGGKVFGSYQLTDRLGMHGYALYHVEYKRGTG--------------EFPYWEVEPGFSYKINDNTGAWLNFRYQEGQWKAKDGYSDSTGAHAWTEDYSKLGVSANYPLSKSWRMFGEASYKKIDFASGPQRDEF---------------DGYIPLFILGVNYSF 289
5 -18.100PF07239.11; C0DX39_EIKCO/30-267; Outer membrane protein OpcA  ali follow..  8  35.......................................................................................................................................................................................................................................................................................................................................................................................................................................RADIPLAQQHAIRAELGYRYLDSDAKANGEKVINGAKTNNVDVYAGYLFSPSGFKNGG----LRVGGGLGYSHGKMDLHSHQTDLDGDAVDISANNLYLKAQVEYEQQLGSGWSITPWTEAQRVEEKYTQIEFASDGRYKQNNYSLGLGVDVNKQLGESTSLTFGPYYRYARDKA---------TSFTHEDENIEVPKTSRHSFGIRGGVRF 238
6 -18.000PF03349.16; Q9KT62_VIBCH/16-428; Outer membrane protein transport protein (OMPP1/FadL/TodX)  ali follow..  9  11.......................................................................................................................................................................................................AGFQLNAQSATGLGRAFAGDAVIADNAAVMSRNPAAMALFDEMALSLGFETITTMIDVKNVSYRGVLGNSVSVQDTDDVGGTSVAPNIHLIVPVNEQFAWGVNAY--------------KTEFSDSYPASEYGGLTDVKSFNLGLAGSYRVNKEWSFGAGLDLIYGQGTMKRKADGWAVGFNLGTVYEMDENNRFGLSYRYS----------------------EFKAKDDYGQEITLPL---PDIAEFSGFHKIENTQF-------------AVHYSVQWI---GWSAFDKIEFRNLVTSRSSVGALTKGSYDKMYEWQDGWHYSIGGTYYLNSDWTLRAGYMYDTSAQDSRTSISV-------DSDRQWLSAGFTYNIDDKSNVDFGFTYLMGKDVAVSENDAGSKLTATT--------HADAILLGLQYSRTF 413
7 -17.900PF07437.11; YFAZ_ECOLI/1-180; YfaZ precursor  ali follow..  16  15....................................................................................................................................................................................................................................................................................................................................................................................................................................................VSASVNAMSISGQAGKEYTNIGVGFG----TETTGLALSGNWTHNDDDGDVAGVGLGLNLPLGPMATVGGKGVYTNPNYGDEGYAAAVGGGLQWKIGNSFRLFGEYYYSPDSLSSG------------IQSYEEANAGARYTIMRPVSIEAGYRYLNLSGKDGNRDNAVADG------------------PYVGVNASF 180
8 -17.500PF03922.14; Q98A70_RHILO/45-230; OmpW family  ali follow..  10  19......................................................................................................................................................................................................................................................................................................................................................................................................................................................................SGYVNAVPGSGLSYSNTVTPELDISYFFTDNIAAELILGTTYANIDGQGAIGGLGK---VGKVWLLPPTLTLQYHFTDFGAFEIGAGVNYTIFYHQ---QVGSADDLKVKNTFGAALQVGFDYMVDQHWGVNFDVKKLFLKPD---------FDVTVAGAKLTGKAKLDPWVIGAGLTYRF 186
9 -17.400PF09381.10; D1AL54_SEBTE/71-353; Outer membrane protein G (OmpG)  ali follow..  9  37..............................................................................................................................................................................................................................................................................................................................................................KGKWSFGMTNYNENHDFDYSDWTRGNYLELRAHYQFTDNDKYAVGLGAALRNYQWFHKDGTSPTT------------TNNRWLNIQPDWRYNFTSLSYEGWLGLYSMFNDAQENG-YSDKELETESGLKYKFNDFISVRLNYYLDRGWNLGGPT-------ENSFNNQQIRGYVPMNFAFFGEKTTTITPYFRQGFINKSWNAGANQAN-----NEIDTRLGLRIDQQLPAGFAVSLEYAYEMRNQQDSA---------------PGQKSFSKFHYTGVGLSY.. 283
10 -17.400PF07396.11; Q7MX84_PORGI/78-408; Phosphate-selective porin O and P  ali follow..  10  16...............................................................................................................................................................................................................................................................................DDESHIGHFKVQELRMSAHGELNRHLSFDWRQRLNRAADGTSFAD-------------------NLSNAIDIAGVDWHPNDKVSFFFGIEYDMNPVEIYQYSDLVDYMTCYTSGVNFAWNFHPEQQLQLQVLNAYNNRFADRYHVTPDV-------ATATSYPLLYSAQWNGTLLGGALHMRYAVSMAHQA----QERNMWYFTAGNLFNPGKRINGYLDLTYSIEGLDDKGIMTARYG-KGKTLTDVKYYALVSKWNFRIFDQVNLFLKGMYENGYAPAQYGESSHT------RHSYGYMGGVEYYTETNFRLFVTYIGRHYRYSA--------------------TETESTNALRAGLIYQI 331
11 -17.000PF04575.13; A6VQE8_ACTSZ/196-486; Protein of unknown function (DUF560 topsan)  ali follow..  11  2.......................................................................................................................................................................................................................................................................................................QFNVNAGYMREENVNNVSDSLYIENTAFKKGDSMLPQKAHGI-QFYVGFERDFNLMYSHYLHIENLTYGKAYWDNNDYTDITNRTYLGYRHKSAKAWSVLPFYERQWYATHRYKKATGVRGELNHWLNR--------------------NWQISTALEYGKEQYHRNAL--LDGNNKLASATLVWLRTPRQYFYFGGDYSFQRAQ-------------ARHYGYDLKTARIGWGQEWERGISTRLGFAVSKREYKADHVLGNVFYFSK-EDDIYNINASLWKRDWHGITPKLRFNWKKQRSN-----------------------SYIDRSITVSVEKTF 291
12 -16.000PF17251.2; Q6MB36_PARUW/28-317; Protochlamydia outer membrane protein  ali follow..  12  1..................................................................................................................................................................................................................................................................................................................................................................TFEVGYRHDDISWNQKAPSYNPN--YKLHRKFKDLDIVQIGLKGRTMLGYNFYGRASVNWGWIVDGDYKR--------------TFSTYKSPVIAGFGSEDFVVTDTRRDVIDENFVYDLSIGVGYPFDCTLALSPVVGYALDDSTGAVNPNSYGSYTHKFNSRWYGPFVGVDFNYRPYGELYAEVEYHFARFKGRYHDELLSQHHIHRSKHAHWTFALGADYDFSNDWTAGLCVKFQDWTASRGHVSSNSSDEIINLSGNERTSHKWNSYAINLTFGKQF 290
13 -15.700PF05538.11; PORA_CAMJE/1-424; Campylobacter major outer membrane protein  ali follow..  7  29..............................................................................................................................................................................................................................................IKDVDVSGVLRYRYDTGNFD-------KNFVNNSNLNNSKQDHKYRAQVNFSAAIADNFKAFVQFDYNAADGGYG------------------ANGIKNDQKGLFVRQLY--DVATSVIAG--KQQLNLIWTDNAIDGLVGTGVKVVNNSIDGLTLAAFASVGNLYGAAAVGSYDLAGGQFNPQLWLAYWDQVAFFYAVDAAYS-DGINWTLEGAYLGNSLDSELDDKTHANGNLFALKGSIEVNG-WDASLGGLYYGDKEKASTVVIEDQG-SRLNGDTGRNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLG--------GGKKLEAVARVDYKYSPKLNFSAFYSYVNLDQGV------------------NTNESADHSTVRLQALYKF 424
14 -15.600PF01278.20; COLY_YERPE/30-312; Omptin family  ali follow..  8  4................................................................................................................................................................................................................................................................................................................................................................SFTVAASTGMLSGKSHEMLYDAETGRKIS-QLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSG----NMDDYD----------------MNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGDAAGISNKNYTVTAGLQYRF 283
15 -14.600PF11059.8; Q6LS16_PHOPR/28-325; Protein of unknown function (DUF2860 topsan)  ali follow..  9  5.........................................................................................................................................................................................................................................................................................................DISLLTGFSNTKSQFNTDIESTPSLESSGESDTKALIA------PLGAIQYTFASDKQIFIGTSRSDLALGRFHIEAEGNGMVSLSYVPGIIGTKTWEDPFLVNENRTETDTKIKGFRFQYKNILGS---------NFSMETSVGQQEIDSEKSGQKQNLSETEIASLDREGNIIYLEGAYRQPIAPGRLLRGALNYTRFDAD-------------GDAMSYDTYGAQLSIIQMLPSSLALTFGYKNAQYEAENPVFDEKQ------KDDLWSVFLAYEYNEPTDWGLVSLIGYNTTDSN-----------------------NEDTLMATVGINYK. 298
16 -14.600PF00267.21; OMPF_ECOLI/28-362; Gram-negative porin  ali follow..  9  1....................................................................................................................................................................................................................................................................................................................KDGNKVDLYGKAVGSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNNNSEGADAQTGNKTRLAFAGLKYADVGSFDYG-VATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKAEQWATGLKYDANN-IYLAANYGETRNATPITNKFTNTSGFANKTQ------DVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGD---------VDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVG-------------------SDDTVAVGIVYQF 335
17 -14.400PF16961.5; Q5LG58_BACFN/59-257; Putative OmpA-OmpF-like porin family  ali follow..  10  4............................................................................................................................................................................................................................................................................................................................................................................................................................................................................RALSTNWADKKLMVGFEGGWFFKDQWKLNLGGGVSFTNNPGYPAVPGTID-RAVADAQSFAYNVSAGVDRYFNIKTGIRVGFAYGENEMKYDEETSMGKSIAESWNLRGALTIGVDYFVLPALYIGAQIDPFAYTYN-----KTTYNPQAGLGDLSADSHNYSVLAATFKIGFKF 199
18 -14.300PF16941.5; F7YR64_VIBA7/1-344; Putative cyclodextrin porin  ali follow..  11  1..............................................................................................................................................................................................................................................................MKRTLLAISVATAAFAASEHGLNPEDSFFDQALQFGGH------VGTSLEYEDK-------ITNGFTGIDKKEKTTTHEAFGYNNAKWNMTALYALKI-------ENREQHEGSYHENEDGLKHLFSLNKGYDLSNGWATGLIYELEYTDSKVYSPYVSGLRKNLAEHSLRPYLT-----------------GFYSNLEYLYSKEDKSEWGERTETGYSILFRPYKRFG-NWELGLEMYYQIKDNEDYQSNGNINE-----ISDFTEKYIEPVVQYSFDDAGTLYVRARLGDNETNNASNSGGGNANVDYFKDIRKATLGYEQAVGDSWLVKGEYEFANEVEEKSKLAGWEAKN----------ESELTQHTVYLQALYRF 344
19 -14.300PF01389.17; OMP53_HAEIF/23-224; OmpA-like transmembrane domain  ali follow..  11  39...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RRNTFTYGVFGGYQILNQDNFGLAA---ELGYDDFGRAKLREAGKPKAKHTNHGAYLSLKGSYEVLDGLDVYGKAGVALVRSDYKFYEDANGTRDHKKGRHTAFAVGAEYAVLPELAVRLEYQWLTRVGKYRPQDKPN----------TAINYNPWIGCINAGISYRF 198
20 -14.000PF13505.6; Q98N05_RHILO/16-224; Outer membrane protein beta-barrel domain  ali follow..  14  11..........................................................................................................................................................................................................................................................................................................................................................................................................................................AADVVQPVEASGFNWSGAYIGIGGGFGASVHKFSVAPIIDFNGIG-ELTAGYDYMVSDRFLLGGFIDANGGNIGPSISIPGAD-----DLTNSYGFDVGLRAGYLLNPDTLGYVLGGYSWQHFKLDGSGFAEGLNFTQNRSGYVLGVGMETVLRGNWTLKTEYRYAAYGDKSVIDFG------------GSLNVEPSTHTFHIAANYRF 209
21 -13.700PF11853.8; Q74B43_GEOSL/126-531; Protein of unknown function (DUF3373 topsan)  ali follow..  8  1.................................................................................................................................................................................................................................................................................KPKNDSLMTHRFGLNLKAKATKDVSVTARLLMYKTAGAQDDDAVTPGYFADRTGVFDGTLGHIPSDGRLAVDRAY--DEPIWFSVG-----KENREKPDSSGTPDGMTVGWAPDLEALPGAYAKICYGRGFENGFTGKNVNNSLHDTDMLGVQIIPYDTDALSIFFQYNRGF-FPKMTSSAFGDTAPSTDLGAIDWYGLNFLGKVKNIGIGNFNWFVSGAISDAQPNKNVSVAAGNL-SSFKDRTGWAVYAGGRYDI--STGTKLGFEYNHGSKNWITFAPSADDMWTSKVGTRIQELKLQPISSYLSKVFFKLGYQYYDFEYTGWVGAPQKIADIKASDLQLMAPVKYAQDI-YATFEVHF 406
22 -13.200PF16956.5; Q3IIM9_PSEHT/1-267; Putative general bacterial porin  ali follow..  10  29...........................................................................................................................................................................................................................................................................................................................................................................ISNLGFKHETSSNNNTVAVDSIY-------------YLSPKKTLGPYDQFEYINKQSNVYGSYADDDSSDVTSVGGEYFINNFVVGASYSNLDTG----------SHNEFYTLSGGFFFNPNLLAKVTLVENKNGEDFALFDLAYNGVTVTADDDFDYRAVAAKYFIDLQQGNFLTFEGKYESIDDKEN-----------------QWVAETNYYFSKATSVFANY--NKQDAYSFGAQHFINENVGIKVGYGNNADDSGNDAYFANMRFQF 267
23 -13.100PF05736.11; PORF_PSEFL/1-186; OprF membrane domain  ali follow..  12  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................KLKNTLGFAIGSIIAATSFGALAQGQGAVEGELFYKKHIEDGFNPGARIGYFLTDDLSLNLSYDKTNHTRSNDGTGSQ------KIGGDTSSLTAQYHFGQAGVDSLRVEGGFGHQSRGNVKADGHSGRD-----QSTLAIAGAGVKYYFTNNVYARAGVEA-----------------------DYALDNGKWDYSALVGLGVNF 182
24 -12.500PF12094.8; G4QGK9_GLANF/10-436; Protein of unknown function (DUF3570 topsan)  ali follow..  10  34..................................LYYGETDRVSLLEGVISATKDFGDQHILNTKLVIDSL------TGASATGAVAQPYAQTFSRPSGNGQYTTSPNELPLDDTFRDTRLALSANWTQPIYRINVGGNVSREY----------------------DYLSVGANVSAERDFYNKNTTALFGLSYQFDSIDPVG------------------------------------GRPIPLSTMVVNNGQFGAGDAGEEAFEAAFEQTRIDGSDDKSTVDALFGLTQVINRRMIVQLNYSYSNSSGNDPYKLLSLVNENGETQSIHENRPDSRAKHSVYAQTKYAF-DNAVADVSYRFATDD-------DIQSHTIDSRLRYNLTETDYIQPHVRYYQQSEADF-------------------------------------YRPFLNEGEALPSVASADYRLGEMTAITVGLKYGHKMNNGHEWGVRAEYYQQDPKNAGFESIGVLATQDLYPSVKAFILQFNYNF......................................................................................................... 427
25 -12.400PF06178.13; Q8ZQ33_SALTY/16-230; Oligogalacturonate-specific porin protein (KdgM)  ali follow..  9  1..................................................................................................................................................................................................................................................................FSSYLQAATLDYRHEYADRTRINKDRIAIIEKLPNGIGFYVDASVKSGGVDGEQD----------------KHLSDLVANAIELGVSYNYKVTDNFVLQPGFIFESGP-------DTSIYKPYLRGQYNFDSGVYMAGRYRYDYARKTANYSD-----------------DEKTNRFDTYIGYVFDELKLEYNFTWMDSDQIKFD---NKKTNYEHNVALAWKLNKSFTPYVEVGNVAV--------------RNNTDERQTRYRVGLQYHF......................................................................................................... 215
26 -12.200PF11336.8; Q63N34_BURPS/1-524; Protein of unknown function (DUF3138 topsan)  ali follow..  10  20................................................................................................AASTSAQIKALQAQLNALQAQVKELRTALASQHGAAG-----GASSQGAAAAAAAAPVDESSPDYGRASATLTHDDVTQMKQQIANQQLKVDALTDAANTGPIAGLSVTG-FNRAAGTSSFLFANHESNYNYFNSTFGDLY----LDIKKTFGVGPMAPSAEITLMPNRGNGITLLQNSRGNIGNNILNTAVVNVPLSATTTLVAGGGYEVQQSNQMLTLTHNLLYDFSDPGSYIGIGANYTKGNWAWKFLLGNEQYRTYGSVTQTGTNALGEPITTSNKVPTFTARVDYTWSSALDLGGSFNIGRQTLGSATTQSGATVYGPGG--QASSPYGAFFFAEADATYTLADIQYNAEIDYGQQQ--HAAFNGGRAQWYGLSLLAHRKFNVPVLMGATLRYDFLANGKNGGGGGGIALNGNGMDTADGFGIDAD---------------------CLATSKANGGLGFECKGANRQDVALDLLFYPTQQITVKVEYRHDWANNKVFLRNDGSYSK--------------SNDLLATQFIYSF 524
27 -12.100PF02462.15; P95343_NEIGO/52-174; Opacity family porin protein  ali follow..  11  1.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGYRIND-LRFAVDYTRYKNYKAPSTDF------------KLYSIGASVIYDFDTQSPVKFGARLSLNRASAHLGGSDSFSKT-------GLGVLAGVSYAVTPNVDLDAGYRYNYVGKVN-------------------TVKNVRSGELSAGVRVKF 123
28 -12.000PF01617.17; O52104_EHRCH/32-280; Surface antigen  ali follow..  8  57...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................KGYSFKYENNPFLGFAGAIGYSMGGRIEFEVSYETFDVKNQGGNYKNDAHRYCALDRKASSTNATASHYVLLKNEGLLLNACYDVVSEGIPFSPYICAGVGTDLISMFSYQGKLGLSYSINPEASVFVGGHFHKVAGNEFRLKAFATPSSAATPDLATVTLSVCHFGVELGGRFNF 249
29 -11.900PF07642.11; Q0BRB4_GRABC/58-438; Putative beta-barrel porin-2, OmpL-like. bbp2  ali follow..  7  1.....................................................................................................................................................................................................................................SIKLDA--------LDGGFVINGNTPDNGVNFGQL---------TDRSNQATLNQAALTLHRDIDSDFGFNLQLIYGSDVRYLP-------FLGEFNKMTSDRYKLVPLQANVAVHTPWLFNGGIDWKIGQYISPVGFETIDPATTPFYTHSYTFNFAV-----QHTGFLSVSHVSPMVDVYFGVNTGNFTTFGGGDNNSRPSGVFGFQLNNLMNGILALTNIGPETGSLAVGPEVANSALRFFDDIVIGYKASDKTTLTLELNYLRDEV-----------------INAESFSTVGYYSHVFNDHWTFNARAEVFRDMDNYFITGFKEANGSPGPGTYGDLTLGVTWKPIAGLMLRPEVRYDRSLNGAGSFVYSDTNPVGH-----------GQFLFAADAILQF 381
30 -11.900PF14905.6; E6X881_CELAD/375-789; Outer membrane protein beta-barrel family  ali follow..  8  2...........................................................................................................................................................................................................................................KFKKEGHNIELEIDYNKFNQDEDALFSSSGNSVFPNYVDMVDTNRKQTIVNLDYVNPLDSISKLELGVESRNFETNVD---YTSTGFNEGNLIPTPDTDFVYGMDIYSAYATFGQNKKWSYQAGLRVENVEVKADTNNIRTFSDQYTQL--------SAYITYSPNDKNQFQLSLSRRVDRPGLQQVNPI---------------EWSTPLISSFGNQNLVPQFTN-------------SYEVNYTKREKITTGIFYRQIKDENRAVYVDRLDLNLTYDNFDNTTAYGMEVSLNYKPLTWWSINGSFDLFSQTQRGIAIEE------EVENTAWNFRMNNSLKATKNLSFQVFGFYRSLNFND--FNTMRFAFDSTRPYASTGQFNWESRTVYAGLSY.. 391
31 -11.600PF07585.11; Q7UY45_RHOBA/256-599; Putative beta barrel porin-7 (BBP7)  ali follow..  11  2..........................................................................................................................................................................................................................................................................................................VRAEYLLWSLDGMDLPPLVTTSPDGTDPEDTGVLGQAGTTTLFGNNTVLDSMRSGMRVTLGWSDDN-------------------------CGNGFELSGMGIFRDEETYQSNRGGAGAESSMLIAHPDFLAGSVNIQAENELASFEFNRRHSLSSMRGQRVDFLLGYR------------GSLEEMLRIDQSSEYTAAQGPIISGTTVDLFDQFDAENQFHGAQVGLQLQRCSGATWDAHAKIAFGVNRAETTIAGQTTNTVPGGGSSTFEIGLNLTTQVHRDMKLTIGYSMMIWSDRNVSLFPPEAPTGTNQPAYDLTTSSFIAHGLNIGATFQF 344
32 -11.200PF05150.12; A0A0W0SPB7_9GAMM/33-312; Legionella pneumophila major outer membrane protein precursor  ali follow..  6  11.......................................................................................................................................................................................................................................................................................................................................................IGVQALYLQPIYSSQRGYELTQSDTFREVEHDWDWGYRLEGSYHFSTGNDITMTWVHFDDDNSHHSGYAGVTPFSGPFL--------VPFGITIDNRFDQVNLVMGQHVDMGLLKDARFYGGLQ-------------RIRLDATY---------NYAATIPVLAPAGFSQDRDADFNGVGIGIDYAYDLVRGFSIAGSILYGTSRFNNRFIFAPSGLVPINVYASKEAKLGLKYAYQGVFNIEGGYQVLNY-------------DALHVFNLAANLKNSDFGLYGPYLGAKW 278
33 -10.100PF00593.24; Q8P343_XANCP/286-782; TonB dependent receptor  ali follow..  8  49........................................................................................................................................................................................................................................................................................DDDLFYVAGDFQPNDAISLHTQVYHHENKGQGHWWSPGQASNPGTPQASIRSTNYWINRTGGIASLGWDLGPH-HLEAGLWYERNHHDVSQNYIITTRQFYVQGNFKFLDDVDLGIKSPSTEMTARETPGIAVEAPVATGSIKAYRLAEGQEVFASYAENIAFQGGGAGGPLLVTQASFDASVGALEPEKSRTLEAGYRFV-RDRFEASLVGYDVTFDNRLLSLNPCASIQQGTNVGSVSSRGGELTVIWKPTSYLQWYNSASINRSTYDDNYVQNGVAGKTTVDTPKRMLASEIAFNY-AGWNVNLRGKYTGERFYTYTND--------------QGFGGYT--SFDAGAGYEF 440
34 -10.000PF06082.11; GFCD_ECOLI/33-691; Exopolysaccharide biosynthesis protein YbjH  ali follow..  10  53YTDVRTRKYSQWEDFSGDQSYKDKSFDFKLREEGYWLPQVA---FGKRDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASI--------GGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLP--------------QASHFNVGAVYRGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEPLQQQRVEAEDLSAFGRGYRIRED--------RFSYSFNPTLSQSLGGPEDFYMFQ----------GLMSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYL------NNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPDACWALGVDVNYVKQRD---------DNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVQYLAKD--------------------KGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKG............................ 613
35 -9.970PF10677.9; C6XUB1_PEDHD/25-222; Protein of unknown function (DUF2490 topsan)  ali follow..  8  5............................................................................................................................................................................................................................................................................................FLFLNSTKFNDKWGMHLDVQLRSADEWD-----------------------GLRNFLFRPGVTYYINKKSNATVGYLLTNTFLDQTGPVGHVLTEHRIWEQYILMHKIK-SVAVQHRFRLEQRFIEAAG----------DDIFSQRLRYFLRGIIPLTETKETFTKGPFAALQN-HKAKLNGKLFDQNRAYGAIGYRFSKSFDVEAGYLNQFINGASNNTMN................................................................................................................................. 198
36 -9.760PF04338.12; Q74AK7_GEOSL/122-330; Protein of unknown function, DUF481 topsan  ali follow..  10  12...........................................................................................................................................................................................................................................................................................................................................................................................................................................TDTKAATLSTLFQVRTKRHRFTVEAKYAYGEAD----SRTTVRNSLGSLKYDFFTTDKVYTYAQTLLEKDSFANL--------------NLRNTEGLGVGYQFFDDRTLNLGISYFNEDVIEGEDRQDGSGRYTPSVSGVTLRADQGVRISLVNDIAANLEVDYR-----------------NSRPEAGKRNSDLL---FIMGLTYQY 209
37 -9.580PF13372.6; Q89MD1_BRADU/82-472; Alginate export  ali follow..  11  13FEYNNAAGFGTGNTPADSYLLLQVHADVHFNENWRAFIQLEDDRSFHKFNVTSVDQDRLDLRLAFLEYVNTFSGGTLKAR-----IGRQDFAFDLQRFVSSRDGPNVRQSFDAIWADWETGVWRFIGFVSRPVQYFDGRPFDDTSNDNFRFSTLRVERKVFGDNELSYYSLYERSNARYLDASGDEHRHVFDARFAGNAQHFDWDLEAMGQVGQVGTK------DIRAWAVGARTGYTFANAPWQPRLGFDAASGDRRPADGTLGTFNPLFPNGYYFTLANLMHLKPSITVSPADRLKVMAAIGLQWRETTADAI----YVQPNVPIVGTAGKGSNWTGAYGQFRVDYAFNDHLTGAIEAVHFDVGDTIIRAGGHTSNYVGVQ............................................................................................................................................................................................................................................................ 391
38 -9.560PF12099.8; R5KMA1_9BACT/7-191; Protein of unknown function (DUF3575 topsan)  ali follow..  10  4.............................................................................................................................................................................................................................................................................................................................................................................................................................................................VLAMSALTAAYGQKIALKTNALYWATTTPNIGVEASVGKKHTVQLFYGLNPWKQSG------------GDQSSLRHWTLMPEYRYWFCQSFNMGGQFNMGSVDLPFGVFNELEDHRYEGWYAGGGITAGYQWPLSKHWNIGVGYDYIQYDKFRCGECGERLKSDHTNYFGPTK--------LALSVLYIF 185
39 -9.060PF13609.6; Q2RS83_RHORT/7-331; Gram-negative porin  ali follow..  8  1..........................................................................................................................................................................................................................................GSTMLVAVGALTGTAVAADPISLSLQYFGGVSTFKDGNREDGFGVDTDTEVYFKGSTTLDNGITVAAMIQLEAEADNAV----------------------NADEQYVTVSGAF------KIQAGQKEGAFDQLTVYAPTLNDDDAKISYFTPKFYGFSAGASYTPQPGGSLV------------------PATKKNRDLAQFGIGYDNKFGDIGVKASATAATQSNFW---------IYQGGLSANYAG-FTLGGTYTEIDDESASSGTVYSTAP-----SSEGRLWSAGLSYAT---GPYSVGFAYAQTNHKSGGDNAI---------------YKLGADYKMGPGISLVGNVFYGENDSNT..................................... 324
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.