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Query: PF12097.8; Q5NIP1_FRATT/1-374; Protein of unknown function (DUF3573 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLNKINIVFICFLVLSITPFMGFSNSFKNSNEQSQKSNSIDKQGITQLQSQIANIQAEINHLTQIKNSNNSAQFATYSSKVENIGLPNSLPDNNKLTLDIMTNIDSDSSIINLSDCSIGGIFDKDGGINVGGAPAITTQGEVTFLGAYSGNNTVPIGMISSNLFASTVMGLRNKFDSYSIFFGGKIEADAQLWFGSSTISNKATNLASNGQNISLTAANLYFLSNVGHYVTAEIEFNTTELNNFSLGNAFVIFGNLDTSPFFLTAGRNKLSVGAFGGGGPWTGGITKNFLSPGKVTNVSLNYKSDVWNANVAVFGSNDNQFNFSTGLFYAQKWTQDIAVGFNTGYVYNMAGAGNPSLSRFLQSQGHPTDTIGSFLast
1 -146.000PF12097.8; Q5NIP1_FRATT/1-374; Protein of unknown function (DUF3573 topsan)  ali  100  1MLNKINIVFICFLVLSITPFMGFSNSFKNSNEQSQKSNSIDKQGITQLQSQIANIQAEINHLTQIKNSNNSAQFATYSSKVENIGLPNSLPDNNKLTLDIMTNIDSDSSIINLSDCSIGGIFDKDGGINVGGAPAITTQGEVTFLGAYSGNNTVPIGMISSNLFASTVMGLRNKFDSYSIFFGGKIEADAQLWFGSSTISNKATNLASNGQNISLTAANLYFLSNVGHYVTAEIEFNTTELNNFSLGNAFVIFGNLDTSPFFLTAGRNKLSVGAFGGGGPWTGGITKNFLSPGKVTNVSLNYKSDVWNANVAVFGSNDNQFNFSTGLFYAQKWTQDIAVGFNTGYVYNMAGAGNPSLSRFLQSQGHPTDTIGSF 374
2 -13.800PF11336.8; Q63N34_BURPS/1-524; Protein of unknown function (DUF3138 topsan)  ali follow..  14  1....MKKKLICLLVAGALPGFAGAASTSAQI--------------KALQAQLNALQAQVKELRTALASQHGAAGGGASSQGAAAAAAAAPVDESSPDYGRASATLTHDDVTQMKQQIANQQLKVDALTDAANTGPI-----------------------------------------AGLSVTGYIDPTYVFNRAAGTSSFLNHESNYNYFNSTFGDLYLDIKKTFGV-MAPSAEITLGNIGNNILNTAVVNVP---SATTTLVAGLVPSFGG--NQMLTLTHNLLYDFSDPGSYIGIGANYTKGNWAWKFLLGNEQYRTYGSVTQTGTNALGEPITTSNKVPTFTARVD........................ 311
3 -8.850PF15908.5; H3AQS5_LATCH/557-711; Hyaluronan mediated motility receptor C-terminal  ali follow..  14  36............LSNKVKPFQEQLDAFEAEKNCLLNENGAAQEELNKLSDAYANQRQKIKHVVKLKEENSQLRQEVTKLRNQLAKEKQVQKKFEDQ...................................................................................................................................................................................................................................................................................... 125
4 -8.120PF06637.11; F1MHE4_BOVIN/1-440; PV-1 protein (PLVAP)  ali follow..  13  32....VSLI---LIILGLVLFMVYGNVHVSTESNERRADGLYGQVVG-LTASQANLTKELN-LTARAKEAINQMMLSARRDLDRINASFRQCQADRVI..................................................................................................................................................................................................................................................................................... 125
5 -7.910PF11853.8; Q74B43_GEOSL/126-531; Protein of unknown function (DUF3373 topsan)  ali follow..  11  2...............................................................................................................................................................................................................PKNDSLMTHRFGLNLKAKATKDVSVTARLLMYSDGRLAVDRAYATWSNIGDEPIWFSVGRRPSTGGV-ENREKPDSSGTPALLVDYAFDGMTVGWAPDLEALPGAYAK........................................................... 144
6 -7.470PF08347.11; H2RR76_TAKRU/1-251; N-terminal CTNNB1 binding  ali follow..  15  2..................PQLNGGGGFKDEGEQEEKINVSAERDLDDVKSSLVN-ESESSSDSEQAERRPQTRADSESYDKARDYFSEALRRQQD....................................................................................................................................................................................................................................................................................... 90
7 -7.460PF13097.6; G5BGG5_HETGA/126-302; CENP-A nucleosome associated complex (NAC) subunit  ali follow..  15  105.IRELDIV--------LSAFEKTILEYKQKMESKVCTEAINK---VNIKEELIRMLKEVQMLKNLKNAKMISDMEKKRQRL..................................................................................................................................................................................................................................................................................................... 177
8 -7.410PF15279.6; B4N5Q1_DROWI/245-568; Sine oculis-binding protein  ali follow..  11  1.........TC----------DWCKHVRHA------VSYVDQDGASQLQEKCLN-QYKMQHLDMNPHLRDQGLDAGNEAALITPDLWLRNCRSRSASPASTVSVSPGPIKRNSPCATPPSNPTKPLISVAPVSKLLALRS.......................................................................................................................................................................................................................................... 126
9 -7.250PF11077.8; Q0N470_9ABAC/1-195; Protein of unknown function (DUF2616 topsan)  ali follow..  15  4................IKPFLKYSKQFRACDDFNRK-AKIFEKWSIEAESAVMATNTQHSLDNNGSNDNEPCEKTRVFTQIECPLRRGFK............................................................................................................................................................................................................................................................................................ 76
10 -7.240PF15238.6; G1KYC8_ANOCA/2-303; FAM181  ali follow..  16  8LLNFVNLA---------------SSDIKAALDKSAPCRSVDHR--KYLQKQLKRFSQKYARLPRCHHHHHPHHMQQPSSLRERKAELEGKSRGLNTSESPEASEGRVAV......................................................................................................................................................................................................................................................................... 100
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;