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Query: PF12099.8; R5KMA1_9BACT/7-191; Protein of unknown function (DUF3575 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ICAVLAMSALTAAYGQKIALKTNALYWATTTPNIGVEASVGKKHTVQLFYGLNPWKQSGGDQSSLRHWTLMPEYRYWFCQSFNGWFIGAHLMGGQFNMGSVDLPFGVFNELEDHRYEGWYAGGGITAGYQWPLSKHWNIEASLGVGYDYIQYDKFRCGECGERLKSDHTNYFGPTKLALSVLYIFLast
1 -104.000PF12099.8; R5KMA1_9BACT/7-191; Protein of unknown function (DUF3575 topsan)  ali  100  1ICAVLAMSALTAAYGQKIALKTNALYWATTTPNIGVEASVGKKHTVQLFYGLNPWKQSGGDQSSLRHWTLMPEYRYWFCQSFNGWFIGAHLMGGQFNMGSVDLPFGVFNELEDHRYEGWYAGGGITAGYQWPLSKHWNIEASLGVGYDYIQYDKFRCGECGERLKSDHTNYFGPTKLALSVLYIF 185
2 -27.500PF16961.5; Q5LG58_BACFN/59-257; Putative OmpA-OmpF-like porin family  ali follow..  11  14............................KLMVGFEGGWFFKDQWKLNLGGGVSFTNNPGYPAVQSFAYNVSAGVDRYFNIKRVPNLMWYTGIRVGFAYGENEMKYDEETSMGKSIAESWNLRGALTIGVDYFVLPALYIGAQIDPFAYTYNKTTYNPQAGLGDLSADSHNYSVLAAPTFKIGFKF 199
3 -21.300PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein  ali follow..  8ILSAVVWLVAAGTPASAAEHQSTL----LNGINVKYRYEFTDTLGLITSFSYANAEGEQKDSVRNRWFSVMAGPSVRVNEWFSAYYARVSSFAGDYVTLTSDEGKKQEHLTRSDSGRRSHTALTYSAGVQINPTENIVVD----LAYEASGRGDWRTEA-----------------FIVGTGYRF 199
4 -18.700PF03922.14; Q98A70_RHILO/45-230; OmpW family  ali follow..  14  37..............................TPELDISYFFTDNIAAELILGTTYANIDGQGAIKVWLLPPTLTLQYHFTDFGA--YIGAGVNYTIFYHQQVGSADDLKVK--------NTFGAALQVGFDYMVDQHWGVN--FDVKKLFLKPDFDVTVAGAKLTGKAK---LDPWVIGAGLTYRF 186
5 -16.500PF05736.11; PORF_PSEFL/1-186; OprF membrane domain  ali follow..  10AIGSIIAATSFGALAQGVEGELFYKKQYNDSPGARIGYFLTDDLSLNLSYDKTNHTRSNDGSQKIGGDTSSLTAQYHFGQAGVDSL---------YVEGGFGHQSRGNVKADGHSGRDQSTLAIAGAGVKYYFTNNVYARAGVEADYALDNGKW-------------------DYSALVGLGVNF 182
6 -15.300PF07239.11; C0DX39_EIKCO/30-267; Outer membrane protein OpcA  ali follow..  13  4........................................DGRYTVTAGYAHENAKIDQLKYS--DGVTLQGRADIPLAQQ--------HAIRAELGYRYLDSDAKANGEKVINGAKTNNVDVYAGYLFSPSGFKNGGLRVGGGLGYSHGKMDLHSHQTDLDGDAVDISANNLYLKAQVEYEQQL 139
7 -14.800PF01389.17; OMP53_HAEIF/23-224; OmpA-like transmembrane domain  ali follow..  49.................................GGYQILNQDNFGLAAELGYDDFGRAKLRKHTNHGAYLSLKGSYEVLDGLD-VYGKAGVALVRSDYKFYEDANGTRDHKKGRHTARASGLFAV--GAEYAVLPELAVR----LEYQWLTRVGKYRPQDKPNTAINYNPWIGCINAGIS--YRF 198
8 -13.900PF01856.17; O26005_HELPY/59-248; Helicobacter outer membrane protein  ali follow..  15  2...............................FEVGYKQFFGKKKWFGMRYLTERDSYQGQYYVNLFTYGVGLDTLWNFVNKENGFVVGIQLAGDSWATSISKEIAHYAKHHSNSSYSPANFQFLWKFGVRTHIAKHNSLELGIKVPTITHQLFSLTNEKGYTLQADVRRVY----AFQISYLRDF 190
9 -13.900PF11557.8; Q7ME68_VIBVY/1-330; Solitary outer membrane autotransporter beta-barrel domain  ali follow..  12  11SVFAIILLPSFALSAQELNFATAIVLTDSDVFTVGF-HDFDPNEWLNLDNEELGSADSVNLRKKIGVSTLPFEFALYEDPDSQ-----KHSLQGRLSALGIEQDVSIVDTSVSDSHREYVLGAFLEYTNSRQLSENWTFDASIGAHLMYYRSDYTYRSDALADYKSNTDAWALVAEPNVQAKYLQ 207
10 -13.800PF16946.5; B8K3G3_9VIBR/48-336; OMPG-porin 1 family  ali follow..  16  160................................EPGFSYKINDNTGAWLNFRYGQWKAKDGYSETETEWIIKPGIWHNFGKLSASLWG------------EFGSFEKSVDSTGAHAWTEDYSKLGV--SANYPLSKSWRM--FGEASYKKIDFASGPQRDEFDGYIP----------FILGVNYSF 289
11 -13.800PF13505.6; Q98N05_RHILO/16-224; Outer membrane protein beta-barrel domain  ali follow..  59...........................VFGELTAGYDYMVSDRFLLGGFIDANGGNIGPSISIPGADIDLTNSYGFDVGLRAGYLLNPDTLGYVLGGYSWQHFKLDGSGFAEGLNFTQNRSGYVLGVGMETVLRGNWTLKT-------EYRYAAYGDKSVIDFGGGSLNVEPSTHTFHIAANYRF 209
12 -13.500PF13568.6; A6LDL5_PARD8/21-237; Outer membrane protein beta-barrel domain  ali follow..  15  55...............................GDIKKWFGESKEWGMMIGLRLE-WTGGVQTKVENSYFSIPVVALYQLNNRVSGPFVSFATNRNF-PTGTKVEFSGDNRASYDFSDNLRKFQWGAQIGTEWKAFKHLIVYADLTWGLN..................................... 213
13 -13.000PF03797.19; Q32HY9_SHIDS/423-663; Autotransporter beta-domain  ali follow..  11  27...............................LTLGIDSRFSRERGLFFGYSHSDIGFDHGGKGNVDSYTLGAYAGWE---HQNGAYVDGVVKVDRFANT----GKMSNGATAFGDYNSNGAGAHVESGFRWVDGL-WSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTQILRA--EAGTAVSYHM 177
14 -12.700PF07437.11; YFAZ_ECOLI/1-180; YfaZ precursor  ali follow..  7AGLAGMLLVSASVNAMSISGQAG-FGTETTGLALSGNWTHNDD-PLMATVGGKGVYTNPNYGDEGYAAAVGGGLQWKIGNSFR---LFGEYYYSPDSLS---------------SGIQSYEEANAGARYTIM-------PVSIEAGYRYLNLSGKDGNRDNAVADG------------VGVNASF 180
15 -11.900PF02462.15; P95343_NEIGO/52-174; Opacity family porin protein  ali follow..  16  1.................................AGYRI---NDLRFAVDYTRYKNYKAPSTDFKLYSIGASVIYDFDTQSPVK--YFGARLSLNRASAHL----------GGSDSFSKTSAGLGVLAGVSYAVTPNVDLDA----GYRYNYVGKVNTVKNVRSGE-----------LSAGVRVKF 123
16 -11.800PF05150.12; A0A0W0SPB7_9GAMM/33-312; Legionella pneumophila major outer membrane protein precursor  ali follow..  47...............................YRLEGSYHFSTGNDITMTWVHFDDDNSHHSDNRFDQVNLVMGQHVDMGLLKDRFYGGLQYA-LDATYNYAATIPVLAPAGFSQDRDADFNGVGPVIGYAYDLVRGFSITANTAGSILYGTSRFNNRFIFAPNVYASKKSVVPSIEAKLGLKYAY 231
17 -10.900PF01278.20; COLY_YERPE/30-312; Omptin family  ali follow..  12  94....................ATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFYNQRFSMPYIGLAGQYRWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYY--VTPNAKV--FAEFTYSKYDEGKKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF 283
18 -10.600PF04338.12; Q74AK7_GEOSL/122-330; Protein of unknown function, DUF481 topsan  ali follow..  12  1...............................LTAGGSIATGNTDTKAATLSTKYAYGEADSRTTVRNSLGSLKYDFFTTDK---VYTYAQTLLEKDSFANLNLR----------------NTEGLGVGYQFFDDRTLNLYAEAGISYFNEDVIEGEDRQDGS------------GRWAAGLEWEA 138
19 -10.600PF09381.10; D1AL54_SEBTE/71-353; Outer membrane protein G (OmpG)  ali follow..  111..............................NIQPDWRYNFTSNLSYEGWLGLYSMFNDAQENGYSDELETESGLKYKFNDFIS------------VRLNYYLDRGWNLGGPTENSFNNQQIRGYVPMNFAFFGEKTTTITPYFRQGFINKSWNAGANQANNEID----------TRLGLRIDQQL 244
20 -10.200PF14391.6; R7CWT2_9BACE/69-370; Domain of unknown function (DUF4421 topsan)  ali follow..  14  58IFLGWSVDVHDLFGKDSHRSQKSEFNLSLYSAKLGADIYYLKSSNNFKVKNVSGFDHIDSRQTGLKSEMKGINLYYIFNKSAGSLIAGFSYSRHKFLFDPGQLPEGISGQLEDRKIRYIDYSLNFGYGYNWVFAKNCLANLSVAVGYKASDICFENGAYNETDHNINFD-----VITRAAVVYN. 263
21 -9.720PF06178.13; Q8ZQ33_SALTY/16-230; Oligogalacturonate-specific porin protein (KdgM)  ali follow..  10  67..............................ELGVSYNYKVTDNFVLQPGFIFESGPDTSIYKPYLSGVYMAGRYRYDYARKTAN--TNRFDTYIGYVFDELKLEYNFTWMDSDQKFDNKKTNYEHNVALAWKLNKSFTPYVEVGNVAVRNNTDERQ------------------TRYRVGLQYHF 215
22 -9.560PF11854.8; A1S4W3_SHEAM/64-698; Putative outer membrane beta-barrel porin, MtrB/PioB  ali follow..  10  446...VSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPLTEHLLLNGFLGMDWRDTTQENRDEHTSASLGLKWQNLMDNKLS--------LGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANYQLSDAMSL----RIDWLYENYSDMDWGNDGLTPDSIPNLILLGSLLGFSFSYQW 635
23 -9.560PF11059.8; Q6LS16_PHOPR/28-325; Protein of unknown function (DUF2860 topsan)  ali follow..  171..............................YLEGAYRQPIAPGRLLRGALNYT--FDADGDAMSYDTYGAQLSIIQMLPS-------------LALTFGYKNAQYEAENPVFDEKQKDDLWSVFLAYEYNEPFGTDWGLVSLIGYNTTDSNINFYNEDT---------------LMATVGINYK. 298
24 -9.470PF06629.12; Q47GV4_DECAR/36-256; MltA-interacting protein MipA  ali follow..  86........PAFDWDLGFVSLSASLFTDLTNRLYAYRQIVKNETWKIGAFVGID-----------------------RMSSRVSNYFFGVNELEASPDRPAFH--------------TGSATNATAGFDGRYRLDKDYSVLFGLQQTRLGHEVAHSPIVETRQA-----------TVAWLGIAWNL 221
25 -9.430PF13729.6; F7YS53_VIBA7/48-300; F plasmid transfer operon, TraF, protein  ali follow..  139....................................................................EFGLALAKIYNIRGQQFSFGITPKIQQLRTYKQNVSVKEFDLADYDKSETNDNAFNLDLGAVWLIND-----FRVGVAVKDLFAQELKTIDGLSSYDLDTQ-----VTISGGY.... 241
26 -9.350PF02253.15; M1FBT8_9ALTE/121-381; Phospholipase A1  ali follow..  12  112................RYQPDWNIGPGRLDTLYVGINHQ-SNGQAEPRSRSWNRIVGMGTYTYKRWLFMVKPWIRLPEGSTDDNNDIESYLGHGSYHAVYKLTEDRTFSLKLLNNLRISDNRTSVEFGYSFPIGEAIFVHYYNGYGESLIDYNERIQR----------------VGVGIML.... 261
27 -9.220PF04575.13; A6VQE8_ACTSZ/196-486; Protein of unknown function (DUF560 topsan)  ali follow..  120...............................VRGELNHWLNRNWQISTALEYGKEQYHRNALLDGNNKLASATLVWLRTPRQY-------------------YFGGDYSFQRAQARHYGYDLKTARIGWGQEWERGISTR--LGFAVSKREYKADHVLGNVFYFSKPREDDIYNINASLW..... 248

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.