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Query: PF12116.8; R6MYF3_9CLOT/3-82; Stage III sporulation protein D, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst GIVEERAIELGEYIIESKATVRKAAKKFGVSKSTVHKDVAERLKYVDPQLYKRVKTVLEINKAQRHIRGGLATKQKYSAELast
1 -60.100PF12116.8; R6MYF3_9CLOT/3-82; Stage III sporulation protein D  ali  100  1GIVEERAIELGEYIIESKATVRKAAKKFGVSKSTVHKDVAERLKYVDPQLYKRVKTVLEINKAQRHIRGGLATKQKYSAE 80
2 -11.300PF02796.15; UVP1_ECOLX/144-189; Helix-turn-helix domain of resolvase  ali follow..  26  8...EDDINEMKILLADPEMTVGAVAKRFNVSRMTIYRYTTK....................................... 45
3 -10.500PF09182.10; Q8YAD9_LISMO/4-72; Bacterial purine repressor, N-terminal  ali follow..  22  4....ERLIDMTQFLLSHPVPLTMFAERYGSAKSSISEDLV........................................ 42
4 -10.300PF13443.6; C7PBR9_CHIPD/6-68; Cro/C1-type HTH DNA-binding domain  ali follow..  10  2.........LDVMMAKRKISLNELSERVDLTLSNLSILKTGKAKAIRFSTLEAICRALD..................... 51
5 -10.300PF08280.11; Q8DP24_STRR6/14-73; M protein trans-acting positive regulator (MGA) HTH domain  ali follow..  23  4...VQRQLRLMETLIQNRMKLHELAEKLGCTERILKSDLNE....................................... 43
6 -10.200PF08220.12; ULAR_ECOLI/6-62; DeoR-like helix-turn-helix domain  ali follow..  22  12...............LGFVTVEKVVERLGISPATARRDINK----------------LDESGKLKKVRNGAEAITQ.... 56
7 -9.000PF08279.12; Q82YX2_ENTFA/90-148; HTH domain  ali follow..  25  1.....RVSYIIKRLIEEDISTYDLSEELAVSRGTVNKDIKR....................................... 38
8 -8.690PF16509.5; D6CK40_XANAP/7-92; TrfB plasmid transcriptional repressor  ali follow..  22  16..LKERNVEAIRQIMVESRQQTDVADELGVTKKAVSQMVGKAWQAHI................................. 60
9 -8.600PF06322.11; NINH_BPP22/1-60; Phage NinH protein  ali follow..  12  1..MTHTVKTIPDMLIETYGNQTEVARRLSCHRNTVRRYLYD....................................... 39
10 -8.430PF13022.6; C8VXN7_DESAS/1-124; Helix-turn-helix of insertion element transposase  ali follow..  17  7..LNLAQKRAAEILAGHEMSLAQIAEHVGVSQRTLYR........................................... 44
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;