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Query: PF12238.8; Q9BHA2_BABBO/74-309; Merozoite surface antigen 2c, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KMDDQKVKDTFKNLYKVNALIKNNPMIRPDLFNATIVSGFSTKNDEEKFNAIFDSIKGMYYRAQHMDKYLKSLRWNTDIVEEDREKAVEYFKKHVYTGEHVVDVNGMAGVCKEFLSPASDFYKLVESFDAFAHAKVHAQVGNFVKPGTDIAPPKDVTDALEKELQEQKPARSESTEVPAPGDASGVQQPPASGTSPQGPAPTTPSPSPESSGNLQGQQGTTKPAGSSFTYGGLTVALast
1 -64.300PF12238.8; Q9BHA2_BABBO/74-309; Merozoite surface antigen 2c  ali  100  1KMDDQKVKDTFKNLYKVNALIKNNPMIRPDLFNATIVSGFSTKNDEEKFNAIFDSIKGMYYRAQHMDKYLKSLRWNTDIVEEDREKAVEYFKKHVYTGEHVVDVNGMAGVCKEFLSPASDFYKLVESFDAFAHAKVHAQVGNFVKPGTDIAPPKDVTDALEKELQEQKPARSESTEVPAPGDASGVQQPPASGTSPQGPAPTTPSPSPESSGNLQGQQGTTKPAGSSFTYGGLTVA 236
2 -10.800PF05518.11; CAPSD_HV19S/10-772; Totivirus coat protein  ali follow..  12  644...................................................................................................................GNRGGEAGGVTGRGNNRSAAPGHASWSERQADGVPVNVTPHHNALRAPPFPRQQGALGGGGNVPLPPAPGAAPPPPPGPPNGPPAGPPPSDDGSSNPAAPVPTAIHAPPAAAQADRAEG.. 762
3 -10.000PF07174.11; V5XE16_MYCNE/1-285; Fibronectin-attachment protein (FAP)  ali follow..  16  2.........................................................................................................................................DQSDVNSSHRRRRTAGLLAAAAAGATAAALTLPVAVSHAEPVPAPPPPVPAEPAPAPGTPAPAPGAPAPTPLPPGVPPPPADPNAPPVDPNAPPPPAPE 100
4 -9.990PF05934.11; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)  ali follow..  8  419...............................................................................................................DVLRQRQVNMRFPSGNKSPEVLRAFDLPDTEAQEHPEVVPSHKPSIVNTSLKETSELPRESTLAECSQCAKDGSGQVPSTAESSPIVEKAQLKTDSECRPHSTEAAAAAARGTDPVSSPCG.... 539
5 -9.850PF03276.14; GAG_SFVCP/9-622; Spumavirus gag protein  ali follow..  13  211...................................................................................................................PPRATSTPGNIPRSLGDDNMPSSSFAGPSQPRVSFHPGNPFAEAEGHRPRSQSRERRRDIPSAPVISAPVPSAPPMIQYIPVPPPPPVGAVIPIQHIRSVTGEPPRNPREIPIWLGRNAPA 331
6 -9.340PF01265.17; E4V2Y5_ARTGP/1-312; Cytochrome c/c1 heme lyase  ali follow..  10  9..................................................................................................................TPAVKQPEIPTPSPSDAAPSRCPVQHGQSMNINATATSEGSCPVRAKDSPFYVPPSNSARLEDATPSAPEPEQKSILSKLNPLNYMFADISQTRAPNQTVDLSVEREPSSIPRGDNSGAK.. 128
7 -9.130PF05782.11; H0WRX2_OTOGA/1-562; Extracellular matrix protein 1 (ECM1)  ali follow..  12  10....................................................................................................VLAYLAVASVASEGDLKAPGQRELRPEHFMQHFHEVGYAAPPSPPLSQSLPMDHPDASQHGPLLEGQSEVQPLPPQEAIPVQEEEMPPPQVPLEKTDLPHPQEAIPAQEENLPPPQLSIEQKEVEPALSQ...... 139
8 -9.130PF09786.9; B9HQ86_POPTR/12-670; Cytochrome B561, N terminal  ali follow..  7  3...................AAYQNPAFSA------ALTAKSLRPSKSALLFIV-SLLSTISRENGLIEKMS------------SQEVAYLFAKAAQAVVGLLFIGSVFSIFKAISRVKIAGVRITSPSKDARDQPQLTNRQLGLIGVKPKVEPVVSESSKKPPKSNPTSSASNVLVPIHQLITCSHQKSRVGSDKSNAGSGNKMASFSTPSKSRNSPSFYLVPGANSPLPSVQSSP 214
9 -9.040PF05616.13; Q9JYD9_NEIMB/10-516; Neisseria meningitidis TspB protein  ali follow..  13  264...............................................................................................................KATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTSPNPEPDPDLNPDANPDTDGQPGTRPDSPA.. 386
10 -8.630PF07267.11; Q2NNY4_NPVHC/1-628; Nucleopolyhedrovirus capsid protein P87  ali follow..  12  245...................................................................................................................TEQTPMPEQSWQSPQQTPAYTEQTPMPEQSWQSPQQTPAYTEQTPMPEQSWQSPQQTPAYTEQTPMPEQGWQSPQQTPNLQPMQTPNPVYEWEEKLREMFPSDLSLQSQKESSSSNGSTVG 365
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.