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Query: PF12340.8; E9E746_METAQ/2076-2300; Protein of unknown function (DUF3638 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst HSNWTPMDYPEWLLLEIDNNILIRPAQVEVAKAIISPHSNQNSVLQMNMGKGKTSVVMPMAALILADKTKLCRIIVPKALLLQTAQVIQSRIGGLVGRQVCHVPFARRSPSDAATLSRYRAIHQEMQVRGGVMICLPGHILSFKLSGLQRLADGQKQAGNKMVETQHWLDTTCRDILDESDLTLSVQTQLIYPSGDFTVVDGHPYRWLVVEELLSLVEKHALSLQLast
1 -106.000PF12340.8; E9E746_METAQ/2076-2300; Protein of unknown function (DUF3638 topsan)  ali  100  1HSNWTPMDYPEWLLLEIDNNILIRPAQVEVAKAIISPHSNQNSVLQMNMGKGKTSVVMPMAALILADKTKLCRIIVPKALLLQTAQVIQSRIGGLVGRQVCHVPFARRSPSDAATLSRYRAIHQEMQVRGGVMICLPGHILSFKLSGLQRLADGQKQAGNKMVETQHWLDTTCRDILDESDLTLSVQTQLIYPSGDFTVVDGHPYRWLVVEELLSLVEKHALSLQ 225
2 -11.400PF02456.15; PKG1_ADEG1/61-425; Adenovirus IVa2 protein  ali follow..  11  63...............EQMDSRYLQHGQLPSINMGK---QPIIGVIYGPTGSGKSHLLRALISCNMLDIPETVIFITPEKNMIPPIEQTSWNLQLVEANFDCREDGTIAPKTSTFRPEFMEMTYEEATAPEHLNIDHPDNIYVKVSKRGPVAI-----------------------IMDECMDKLCSGSSVS.................................. 213
3 -10.300PF10236.9; Q755C9_ASHGO/113-434; Mitochondrial ribosomal death-associated protein 3  ali follow..  11  2.....................YTREATGQLLERL-SGTEHQRVILTGQPGVGKSTLLAQAQVAAFEKGSVIINISHPELFLNGRNDFRTTGEQEQYTQPMYLKKLNKKSVLSSVALTQEYKFPVADTRESASKRVTRLVPGKNTLYDLLSMKTTPAARGMLFQAVIDELVAQSA-TVDNFSRILS-EPLSAYKDTSCRSI--HVLKLQLGRIIMNFVSG...... 208
4 -9.680PF01637.18; A8M939_CALMQ/15-228; ATPase domain predominantly from Archaea  ali follow..  6  4.......................REVAIRQIEKLAEKGTWNPVVIYGPEGCGKSAFLKQAVEVLGEYDYSVVKVSPLEDESNEKLRYSEELRGLFRDIMTRIPTPFNDASALIDIAISLLYDVVRRRIRRKIALLADDVFQAIGLDKAELLVK........................................................................ 133
5 -8.670PF02399.15; OBP_VZVD/13-828; Origin of replication binding protein  ali follow..  12  45....................................SQTRPVTVVRAPMGSGKTTALLEWLQHALKADISVLVVSCRRSFTQTLIQRFNDAGLSGF---------------------VTYLTSETYIMGFKRLIVQLESLHRVS---------------------SEAIDSYDVLILDEVMSVIGQLYS-----------PTMRRLSAVDSLLYRLLNRCSQII. 179
6 -8.530PF07652.14; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  12  2.....................................KKKQLIVLDPHPGAGKTRKVLPEFIRQAVERRLWTLALAPTRVV---AAEMAEALNGL-----YLTPAVIQQHTGKEIVDLM------CHATFTMRLLSGGRVPNYNMFIMDEAHFTDPSSIAARGYISTKVDMGEASAV................................................ 130
7 -8.390PF05894.12; A0A0G0ERS5_9BACT/5-334; Podovirus DNA encapsidation protein (Gp16)  ali follow..  9  1......................LTKDIWYDINRLLSFKALISVVV--MRGGGKTGAKKRCIIDFKEKGQQFV-------WLRRYDSELFEAKKTFFNAIRNDPDLNRKYPDMKLHIIGNKVYIDDEVAGYFIALTLAHKFKSSDFPLVVNI------------------------VYDEFIPD------------DSSRLGYLRSEVTALYNLIETIQRQRDTTR 160
8 -8.280PF00270.29; SGS1_YEAST/680-854; DEAD/DEAH box helicase  ali follow..  16  1.......................RPNQLEAVNATLQ---GKDVFVLMPTGGGKS--LCYQLPAVVKSGKTHGTTIVISPLI----SLMQDQVEHLLNKNIKASMFS--SRGTAEQRRQTFNLFINGLLD--LVYISPEMISA-------------SEQCKRAISRLYADGKLARIVVDEAH............................................ 132
9 -7.830PF13872.6; E4XRW5_OIKDI/32-343; P-loop containing NTP hydrolase pore-1  ali follow..  10  35.....................KLSDLQLEAVAGFYPSGERKGFLLGDGAGVGKGRSISGIIYDNWLNGRKKAIWLSVSNDL---RHDSLRDLNDIGADMIKVHPLHKFKYGHKLTDK------ENGRVQEGVIFGTYASLIGERHQAGATTKRAAQATRLHQLVTWCGRNFDGCIVFDECHKA.......................................... 194
10 -7.610PF04851.15; Q893B7_CLOTE/244-395; Type III restriction enzyme, res subunit  ali follow..  13  1...................KLKPNKMQVEAIQGLERENGQDRGLLISATGTGKTYLSA--FELRNYNPKRALFIVHREQIAKQALNSFMNVFGDTRSMGILS---GTSKDVDKDFIFCTIQT-----------LSKEEVLQYFDKNEFDYI------------------------IIDEVHKAGANSYQKIFNPKFLLGMTATPER................... 152
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;