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Query: PF12441.8; A1BIF8_CHLPD/6-84; CopG antitoxin of type II toxin-antitoxin system, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst KTVPEFRSEQDEREFWATHDSSEYIDWEKAGTAIFPDLKPTMKTISLRLPEQMLNRIKVLANERDVPYQSLLKMFLKERLast
1 -47.000PF12441.8; A1BIF8_CHLPD/6-84; CopG antitoxin of type II toxin-antitoxin system  ali  100  1KTVPEFRSEQDEREFWATHDSSEYIDWEKAGTAIFPDLKPTMKTISLRLPEQMLNRIKVLANERDVPYQSLLKMFLKER 79
2 -12.100PF09274.10; Q9F809_ERWAM/1-76; ParG  ali follow..  10  31......................................SGKSKRVNVNFNEEKHTRFKAACVKNGTSITDVINQLVDN. 70
3 -11.800PF14384.6; Q7CP71_SALTY/37-93; BrnA antitoxin of type II toxin-antitoxin system  ali follow..  20  1...................DIPASEDGQWSEAVRGKFFRPLKTQASVRIDADVMEWLKR----PGKGYQTRLNAILRE. 55
4 -11.000PF05534.12; Q7MY97_PHOLL/58-110; HicB family  ali follow..  18  1.......................YIETCEEEGINPFKEEDKLKSFTLRYPGWLEARLTAAAISHAVSKNQFIVQLL... 53
5 -9.990PF04221.12; Q9KML3_VIBCH/3-84; RelB antitoxin  ali follow..  16  1.........................................TEMLSTRIDHDTKIAFTNVCDEMGLSTSQAIKLFAKA. 37
6 -9.960PF10723.9; Q326M6_SHIDS/1-79; Replication regulatory protein RepB  ali follow..  11  35.....................................KKGTHKAINVFIQSELKDDLTQLCKDSGLTQKEMIEHWILKE 76
7 -9.590PF07328.11; B9K404_AGRVS/5-145; T-DNA border endonuclease VirD1  ali follow..  11  16.....................................TIEGFKVVSTRLRSAEYESFSRQARRLGLSDSMAIRIAVRRI 57
8 -9.290PF13467.6; Q2YPT7_BRUA2/7-71; Ribbon-helix-helix domain  ali follow..  18  11..........................................HATSYTLEDPFFKIIEEIAAARNMTVAALVAEIDSRR 47
9 -9.010PF07878.11; Q46HT9_PROMT/14-56; CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5  ali follow..  24  1.........................................SPRIQVVLPEDLCERLSELAERESRTVSNMAKVLIQE. 37
10 -8.690PF12651.7; A5N8S1_CLOK5/8-51; Ribbon-helix-helix domain  ali follow..  15  1........................................NRTRIYNAVDTILYTKLMQLSKEIMIPISKLLDKAVEL. 38
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.