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Query: PF12938.7; B4L7C4_DROMO/671-895; M domain of GW182, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NSGGFPQRYPAQPSMSFPPNNLMTNMSGTAVTGGNNPNMAALQVQKYLNQGGGPPHGVALGPQSVNASNASVVGFCQNPPNSAPAVNMASNANNQPSGQHIRMLGQQIQLAIHSGFISSQILTQPLTQTTLNLLNQLLSSIKHLQAAQQSLSRGGNTNQMVANLAIAKYKQQIQNLQNQINAQQAVYIKQQNLQQNSQQQHQSGHLNNSGNDYLRNHDAIATLQGLast
1 -62.700PF12938.7; B4L7C4_DROMO/671-895; M domain of GW182  ali  100  1NSGGFPQRYPAQPSMSFPPNNLMTNMSGTAVTGGNNPNMAALQVQKYLNQGGGPPHGVALGPQSVNASNASVVGFCQNPPNSAPAVNMASNANNQPSGQHIRMLGQQIQLAIHSGFISSQILTQPLTQTTLNLLNQLLSSIKHLQAAQQSLSRGGNTNQMVANLAIAKYKQQIQNLQNQINAQQAVYIKQQNLQQNSQQQHQSGHLNNSGNDYLRNHDAIATLQG 225
2 -7.010PF12097.8; Q5NIP1_FRATT/1-374; Protein of unknown function (DUF3573 topsan)  ali follow..  17  1........................................................................................................................MLNK-----NIVFICFLVLSITPFMGFSNSFKNSNEQSQKSNSIDITQLQSQIANIQAEI--NHLTQIKNSNNSAQFATYSSKVENIGLPNSLPDNNK....... 95
3 -6.970PF15324.6; H9GLI0_ANOCA/127-1404; Hedgehog signalling target  ali follow..  17  16....................................................................................................RAVFKQRVQNAPVFKEVKVQLLGNPLVQSDF--VSSVSKILNKLQETDRRLQLAVERQSSLKAPTRERSHQRFGELEKQMHLRNLENFQQQQMNIQSH........................... 158
4 -6.380PF04859.12; W1NYD5_AMBTC/87-214; Plant protein of unknown function (DUF641 topsan)  ali follow..  11  2................................................................................................RYQALEALISCI-SAVKGAYVQLQTAHTPFEVDNIKAADRVISQLQKLSELKRLYAKDLPSSS---SFECSQLEARVQERQSMLRTYEMMVNRLQSE................................ 100
5 -6.270PF16206.5; B4H8S9_DROPE/917-1701; C-terminal region of Mon2 protein  ali follow..  9  674.........................................................................................AVGKDFAGRLAVTALLHRFQEVLKRFNDDERQSGKPLPRFRLSEISFVLKAIATLVVSMKKAPASKVNKPAWDQLITTTTSPEVSRSLREALLQYTDLLQAP.................................. 785
6 -6.110PF17045.5; M4AQB6_XIPMA/17-262; Centrosomal protein of 63 kDa  ali follow..  16  2..............................................................................................SSCEPELQELMKQIDIMISHQRREWQVEKHFLEEEGLLTSKNIIERIGVLQKQLEEILRSRQEAVAKYEQQLQKLREELDLLKGSYQKLQRKQLKQTS................................. 109
7 -6.110PF16046.5; F7AMW1_ORNAN/4-306; FAM76 protein  ali follow..  12  204....................................................................................GDSFSPDLALDSPGTDHFVIIAQLKEEVAT-------LKKMLHQKDQMILEK--KKITELKYQESQMRAKVNQMEKTHKDVTEQLQAKNRELLKQAAALS......................................... 299
8 -5.880PF07147.12; W5PFC1_SHEEP/1-425; Mitochondrial 28S ribosomal protein S30 (PDCD9)  ali follow..  12  322................................................................................................ANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSQLNTLALTAQADQNNPRKNICSKPLYETIEDNDVKGFNDDVLLQLVHFLLNRP................................. 425
9 -5.390PF04782.12; I1H612_BRADI/358-706; Protein of unknown function (DUF632 topsan)  ali follow..  10  158....................................................................................ESRGESQMSIDRTRAVVKDLYSRILVAVQR----EDLRDKELQPQLEELIGSLNRQHEIIKLVSHSGNMKVVIRSESQFQAALLLQVELNTFQRWVGSHRS-YLNS................................... 281
10 -5.370PF11737.8; A1AL31_PELPD/39-272; Protein of unknown function (DUF3300 topsan)  ali follow..  15  1................................................................................................SQQELAQLLAPI--ALYPDELVSQVLMASTYPLEVVQADRWVQGVKSLVNFPSVLSAMSQKLDLTTKLQQKEVMDTIQFLRKKAYDAGNLKTTKEQKVVVEKET......................... 129
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;