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Query: PF12974.7; D0KYK9_HALNC/62-317; ABC transporter, phosphonate, periplasmic substrate-binding protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IGVLAYQGKAQTARRWDSTAAYLSEKNPGYSFHIEPMFLSELAAAVRENRLDFVLTQPLQFVQLAQNDDVWPLATMVVKTPGGTLNRFGSAIIVRADRSDLQHVSDLKNKIVAGASKDALGAWLLGLDTLVRAGIDPKTQIQPLFTGLPMFQIVEAVWQHRADAGVIRAGFLEQLESQGAVKKGEFRVLDPSQYSDYPYLVSTELVPEWPFSATSSVDRVFAEKVARDLMGMTPDNPALISSGISKWALPLDYSTVLast
1 -105.000PF12974.7; D0KYK9_HALNC/62-317; ABC transporter, phosphonate, periplasmic substrate-binding protein  ali  100  1IGVLAYQGKAQTARRWDSTAAYLSEKNPGYSFHIEPMFLSELAAAVRENRLDFVLTQPLQFVQLAQNDDVWPLATMVVKTPGGTLNRFGSAIIVRADRSDLQHVSDLKNKIVAGASKDALGAWLLGLDTLVRAGIDPKTQIQPLFTGLPMFQIVEAVWQHRADAGVIRAGFLEQLESQGAVKKGEFRVLDPSQYSDYPYLVSTELVPEWPFSATSSVDRVFAEKVARDLMGMTPDNPALISSGISKWALPLDYSTV 256
2 -37.300PF06646.11; P37_MYCPN/50-380; High affinity transport system protein p37  ali follow..  1.............SKFFELYSNKKLDKKVTVSFNIIDDSFTKISNIQTAKADFAFVNSQSIKDNGIE-EFNLILQTQTDETNKLINFYRGMILITGSEEDQKKWSDFMNYGIGHGSSGSAGKFQLPDLLLRKHFGSSYPGLDKFANVRGREIGRDNKIKIVFDDANSFAWTHNDDSEKSNNKNNKVEILT-----------YTDPMLYDIGIVSDTLSDRYQKAIAEVFVELAKTKQDIYGPGYNGYNLITDKEIL 323
3 -18.900PF00405.17; TRFE_HORSE/23-349; Transferrin  ali follow..  10  7........SNHEVSKCASFRDSMKSIAPPLVACVKRTSYLECIKAIADNEADAVTLDAGVFEAGLSPYNLKPVVAEFYGSKTEPQTHYYAVAVVKKNSN--FQLNQLQGKKSCHTGLGRSAGWNIPIGLLYWQLPAVSNFFAGSCVPCAYSGAFKCLADGAGDVAFVKHSTVLENLPQEA-DRDEYQLLNTRKSVDEYKDCYLASIPSHAVVARSVDGKE--DLIWGLLNQAQE...................... 271
4 -18.800PF14503.6; F4GIV3_SPHCD/83-314; YhfZ C-terminal domain  ali follow..  11  14VGVMPLPYSKRYEGLATGISTSMNKG-KMRTSLVFSRGADNRLEGILEQRYDFAVVSRLAAEHYVEKQYPIVIAHNF-----GPHTYVDQHALVTCRNGVNLKAQDFSNCRIG-VDEASTDQRILSHRFFRDTQVT--------YVPIVYNQVIPALKGNDIDATIWNADALDARKNG----IFSFPLEQISQDDTEAAIIHLAGKPFISRILAELLNPDEVLEYQKKVMA......................... 225
5 -17.300PF16868.5; Q2SNF1_HAHCH/34-328; NMT1-like family  ali follow..  11  21..................TKVKLQPTHKIGISAISSAGSAENIKLMRDNEAQFSILGSGVFANEGKQRNVRSITMLWQNVEH---------FVLDNETGTISDLVNAKGERLALGSKNS-GTIESNRTILANFGLDLDKDFDLLYA--GYGPSSQALQDGKVVGMGTPAGVPVGAVINAFAQRTDITLLSFTPEQIQQADNGFDLWTPFTVAVRDDIDEETVYLLTKAIYE......................... 255
6 -16.600PF12727.7; A0LFW2_SYNFM/425-616; PBP superfamily domain  ali follow..  14  1...................ANEIKRRDGRMQLSSGNVGSLGGLMAVRRAQTHLAGSH----TGGYNHSYVERYLQGVPIRLVTLAVRQQGLLVRRGNPAGVRGVRDLARPDVAFINRQGGSG-ILFDYCLRKEELAPEEIRGYDQEEFTHMAIAVTVLSGRADAGMAIFAAARALGLD-PVAEERYDLVIPESFWEDPKMGL...................................................... 186
7 -15.700PF13379.6; B0UDN0_METS4/41-302; NMT1-like family  ali follow..  13  10LGFIALTDAGPLFVAKEK--GFFAKHGMPEVEVLKQASWGTTRDNLVLGSEGNGIDGAHILTPMPYLISAGRVTQNNVPVP-ARLNLNGQCISVAKEFRVATDKKKAAGKKAAMTFPGGTHDLWI-RYWLAAGGIDPDRDIETIVV--PPPQMVANMKVGTMDCFCVGEPWNAQLVQQG---------------LGYTALTTGELWKDHPEKAF-QKYPNATRALLMAVIE......................... 243
8 -15.500PF00497.20; A6X2Q5_OCHA4/44-271; Bacterial extracellular solute-binding proteins, family 3  ali follow..  10  26.................ELMEGVAKQLGLAA-EFKDTRFTSLITGARANHFDVIASALYVTPERQKILNFIPYIKA------------SSLLVLKDAKFRPANEKELCGKIIGS--MQGASWLPKLKALSEDYCAKNNLGAIETREFDTDAQVTQALRSGSVDVEFMDNVVAAELLKK--------------FPDDYAVTSSALIYPIMVGVATTPQNKELFNAMNDAFAQMRKDGS................... 217
9 -14.800PF12916.7; A4YDV4_METS5/1-196; Protein of unknown function (DUF3834 topsan)  ali follow..  15  10...................................PVSYPMIASTMKNKDIIIDFG-------KDGSADVILDSTVSLVRRGLR--------TDYVTIKGLMVVSPDVGKRIGVWRKGSAADVLT-RALLDKKGIRGEV-----VYADEMPRLVEMLNKKEVDSIVIASPFAKGKTFEELLG-----------------------IPGSCGASVNANHEEFISAYSEGIELMKQDPQGVAEYVAKKLPIQANLQMI 186
10 -14.600PF09084.11; M7UJG4_BOTF1/16-238; NMT1/THI5 like  ali follow..  16........................ADEGIKVALLEPNDPSDVTEIIGSGKVDMGFKAMIHTLAAKARFPVTSIGSLLDEPF--------TGVVYLKDSGITTDFRSLKGKKIGYVGE---FGKIQIDELTKYYGMEPTD----YEAVRCGMNVSKAIIEGSIHAGIVQMVELEEWLANQGRPRSDVQMLRIDELAEL----GCCCFCSILYIANDAFNPEKVRKFMKAVKR......................... 211
11 -14.300PF02621.14; B9M1W5_GEODF/4-263; Menaquinone biosynthesis  ali follow..  17  3LGYSPCPNDT-------FIFHALVHGLPGLIFNERLEDVETLNRLVLEKTLDVSKISYHLLGYVREDYCLLSAGGA-------LGRGCGPLVVSKKY----ESMDQLKGKRIALPGRYTTAALLLRLFDPALTDIIYLPF----------DRIMGAIADGSVDAGVIIHESRFTYAGLGLVKLLDL-----ERETGHPIPLGG-------IVAKRSLGSEVIAGINSLLRQ......................... 200
12 -12.900PF02916.15; Q8DZD3_STRA5/72-187; DNA polymerase processivity factor  ali follow..  11  48...........................................................................................VVVPKD-SKITNIEAVSKLAAPVKNDTSNITDLI-EHIKSEKGISIT-----PQKTDSYQDAYNRIKSGDSQAMVL......................................................................................... 116
13 -10.900PF01547.25; CYSP_ECOLI/33-278; Bacterial extracellular solute-binding protein  ali follow..  10  2.........DVSRELFAALNPPFEQQWAKDNIKQSHAGSSKQALAILQGKADVVTYNQVTDVQILHDKGKLIPADWQSRLPNNSSPFYSTMGFLKGNPKNIHDWNDLSDVKLIFPNPKTSGNARYTYLAAWGAADKADQFMTQFL-TGGRGATTTFAERGLGDVLISFES--EVNNIRKQYEAQGFEVVIPKTNILAEFPVA---------WVDKNVQANGTEKAAKAYLNWLYSPQA.................. 244
14 -9.020PF13531.6; A9BZ83_DELAS/51-277; Bacterial extracellular solute-binding protein  ali follow..  13  1...IRVVTSGGFSAAYDQLIPLYEQATGHKVVTSRGASMDSIPSRLARGEFDIVILADGALDNLAAQGKVEA-----GSRVDLARSMIGMSVRKGTPKPDISTVDALKQDAKTIAYSASASGTYLANELFPRLGV---EQMKGKATRILSERVGAVVLRGDADIGFQQVSEL--------LPFKELEFVGP-----LPDEVQQRVFFSAGVATGAKSPET-----ARHLIRFLAAPAAAPIVRSTGM......... 227

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.