|
|
|
current user: public |
|
| Query: PF12984.7; R5J8F8_9BACE/3-113; Domain of unknown function, B. Theta Gene description (DUF3868 topsan), from PfamA32U |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 | |||||||
| # | Score | Template | Links and tools | %id | First | RNIQFIVLVLAALCLNTEDAFAQNRSYSGDIGIEPVRLEQSGDFLYIDMNFILKDVKVRTAHGVDFIPQLVAPANTYNLPKVSVKGKDEYLAYERRLSLMSAKEKRKHVAP | Last |
| 1 | -60.800 | PF12984.7; R5J8F8_9BACE/3-113; Domain of unknown function, B. Theta Gene description (DUF3868 topsan) | ali | 100 | 1 | RNIQFIVLVLAALCLNTEDAFAQNRSYSGDIGIEPVRLEQSGDFLYIDMNFILKDVKVRTAHGVDFIPQLVAPANTYNLPKVSVKGKDEYLAYERRLSLMSAKEKRKHVAP | 111 |
| 2 | -7.500 | PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan) | ali follow.. | 13 | 1 | ..MNKILKTMALLAVPATVAVS-----------KDDGMDVKFTDKGPEMTIESCATEAFMGDSVRFSIKLNDEFPLSTLK............................... | 68 |
| 3 | -7.140 | PF07437.11; YFAZ_ECOLI/1-180; YfaZ precursor | ali follow.. | 10 | 1 | ..MKKIALAGLAGMLLVSASVNAMGTETTGLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGGLQWKIGNS................ | 110 |
| 4 | -7.010 | PF12099.8; R5KMA1_9BACT/7-191; Protein of unknown function (DUF3575 topsan) | ali follow.. | 7 | 1 | .......ICAVLAMSALTAAYGQKIA----LKTNALYWATTTPNIGVEASV---GKKHTVQLFYGLNPWKQSGGDQSSLRHWTLMPEYRYWFCQSFN.............. | 83 |
| 5 | -6.830 | PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein | ali follow.. | 5 | 1 | ..MRKLCAVILSAVVWLVAAGTPASAAEHQSTLSDMPGSDDLNGINVKYRYEFTD........................................................ | 61 |
| 6 | -6.510 | PF16956.5; Q3IIM9_PSEHT/1-267; Putative general bacterial porin | ali follow.. | 13 | 1 | ..MKKLVIISSILLSSAATTAMAADSYQSISNLGFKHETSSNNTVAVDSIYYLSP--KKTLGPYDQFEYINKQSN.................................... | 73 |
| 7 | -6.380 | PF10807.8; A6T4F3_KLEP7/3-132; Protein of unknown function (DUF2541 topsan) | ali follow.. | 7 | 1 | .SLYRLSVGLILGVSFITSAAANDHKILGVIAMKRIQLSADRGDVQLSGATVYFKASRGASHTLNVPAGIKEGSTTGWIN---INSDNDSKRCVKKIAFSGHT........ | 117 |
| 8 | -6.380 | PF03100.15; E1SMF5_FERBD/4-136; CcmE | ali follow.. | 9 | 1 | RRKKRLVFASALIGGVAAIASLLIYALNSNLDVVEGSVERDPNSLKIAFQVADTGPAVTVLYDGMLPDLFREGQG------IVAQGTLVDSTTLEASEVLAK--DENYMSP | 133 |
| 9 | -6.340 | PF16328.5; Q8A0D4_BACTN/10-321; Domain of unknown function (DUF4961 topsan) | ali follow.. | 10 | 1 | ..IKIFFLLVLSLIVFGCSFLIKEVNVKQENEGEMVAYIKAGEIATFTFSGEINIDGDASNETFIVAP........................................... | 70 |
| 10 | -6.160 | PF12143.8; Q66NX4_9ROSI/453-578; Protein of unknown function (DUF_B2219) | ali follow.. | 9 | 71 | ..............................INVPHKHAKKSKTTMVLGITGLLEDLEAEGDDTLVVTLVPRTGGDSVTVANVKIE.......................... | 125 |
FFAS is supported by the NIH grant R01-GM087218-01
|
|
|
Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26; |