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Query: PF13343.6; B3E2B9_GEOLS/96-336; Bacterial extracellular solute-binding protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DQFPDIIISPGFNSLFERPFVERFIQTNRFVSVNDYAGDRHLSALGVCDPTGHYTMLAMNLLVPVVDHRRLGGRPVPRCWADLLKREYENSLAIRGHKDGTFCETLLLAIYKDTGVEGLRTMGRNVRYGWHPSQMVKAALGSSADAPAISVMPLFFAQTLVGKEQYSIIWPDDGALISPVTMLVKTEKRAELDDLLAFWAGPQVASIFSGAFFPAVHPGVDNQLPEAATFKWIGWDYIINNLast
1 -98.200PF13343.6; B3E2B9_GEOLS/96-336; Bacterial extracellular solute-binding protein  ali  100  1DQFPDIIISPGFNSLFERPFVERFIQTNRFVSVNDYAGDRHLSALGVCDPTGHYTMLAMNLLVPVVDHRRLGGRPVPRCWADLLKREYENSLAIRGHKDGTFCETLLLAIYKDTGVEGLRTMGRNVRYGWHPSQMVKAALGSSADAPAISVMPLFFAQTLVGKEQYSIIWPDDGALISPVTMLVKTEKRAELDDLLAFWAGPQVASIFSGAFFPAVHPGVDNQLPEAATFKWIGWDYIINN 241
2 -28.700PF01547.25; CYSP_ECOLI/33-278; Bacterial extracellular solute-binding protein  ali follow..  11  47GLKADVVTYN------QVTDVQILHDKGKLIP------------ADWQSRLPNNSSPFYSTMGFLVRK---GNPKNIHDWNDLVRSDVK--LIFPNPKTSGNARYTYLAAWKGKTEQFMTQFLKNVEVFDTGGGATTTFAERGLGDVLISFESEVNIRKQYEAQGFEVVIPKTNILAEPVAWVQANGTEKAAKAYLNWLYSPQAQT................................... 246
3 -12.800PF13531.6; A9BZ83_DELAS/51-277; Bacterial extracellular solute-binding protein  ali follow..  12  53...FDIVILAD-------GALDNLAAQGKVEA-------------------GSRVDLARSMIGMSVRKG--TPKPDISTVDALKQTLLD-AKTIAYSASASGTYLANELFPRLGVAEQMKG-----KATRILSERVGAVVLRGDADIGFQQVSELLP---FKELEFVGPLPDE-RVFFSAGVATGAKSPETARHLIRFLAAPAAAPIVRSTGM............................ 227
4 -11.400PF02030.15; Y045_MYCGE/1-482; Hypothetical lipoprotein (MG045 family)  ali follow..  10  60EKLINGFANNTYSVAVASTYVSELIERDLLSPIDWSQFNQQTKDSKNNELLHWAVPYFLQNLVFVYRGEKISELEQEVSWTDVIKAIVKNRLVFIDDARTIFSLANIVN--KEDGIGYFTNVYESFQRLGLDSNIVINELASGRRQGGIVYNGDAVSEEQIPDGNNFHIVQPKISPLDLLVINKQQSNQKEAHEIIFDLALDGADQTKEQ............................... 342
5 -11.000PF13416.6; R5SZY1_9CLOT/78-401; Bacterial extracellular solute-binding protein  ali follow..  8  35KEPPTLFQINGPIGYKSAKYCRDLKDTDIYSHLVDKSMAVTDGDGVYGIP------YVVEGYGIIYNDAIMQSMDDIKNFDTLKA----EDMQARKADLGIEGVFASTSFAPGEDWDLYLNNSCTDPKMVGAKTVEDSMAEFALGKVAMVQNGNWGWSQVAGVEGNTVKEEDVKFLPIYINSQAKEEDQQASLDFLTWLFSSDTGKVTNKLGFIAPFDTFTAD.................. 321
6 -8.430PF03466.20; Q98I60_RHILO/88-294; LysR substrate binding domain  ali follow..  10  38......................QLILANEELDLTMRQADCAIRLRQPQQPDLIQRRLFTVHFHLYAAPSYVAKHGKPASVSELRNHRI---VTFGLPVPSH-----LSELNWLETVGDFEGGQRVPSLQINDILSIKRAVQGG---AGIAMLPDY---VINKDSGLVQLLPETEVPSFDTYFADAMKNQAKLHVFRDFIIAK....................................... 205
7 -7.580PF10738.9; O53780_MYCTU/57-227; Probable lipoprotein LpqN  ali follow..  11  30........................................................................DLPVPDDWRLLPESSRAPYIVYTQPADPNDPPTIVAILSKLTGDIDPAKVLQFAPGELKNLPGFQGSGDGSAATLGGFSAWQLGGSYSKNGKLRTVIPSQGAVFVLQLNADALDDETMTLMDAANVIDEQ....................................... 167
8 -7.230PF08786.11; D8MWY2_ERWBE/12-140; DcrB  ali follow..  7  3........................................................................QLDLPPGYED------RTLNVFKPLDPAGAVITIARD-LGAYIDRQLQQLNQVLKGWKLESRQPATLGQPALPGESIHASYLREGKRIAQ---QQAVFAVDDRLVLVITQSKTAVLDNGDMATFSSLLES....................................... 129
9 -6.200PF18040.1; D5EMJ5_CORAD/579-672; beta porphyranase A C-terminal  ali follow..  13  1..........................................................................................QFSINKVRTGKGDARLRLSFGREHGTDRKPEVLLNNQPLEVPEDWAGDTQEGRTTFFGMLEIP-VEMSQLRSSNTVTVTFPDSGGKVACAILQVN........................................................ 94
10 -5.930PF03846.14; SULA_PECAS/8-119; Cell division inhibitor SulA  ali follow..  5  8.....................................................................................................................SFSANQHAAEPSVATGGIISEIVYNADQPIVTHLLLPLLQQLGTQSRWLLWLSPQQGLPLDKMVQLHHINPLFTVDAMERALLTGNYSAVLC................................ 109
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.