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Query: PF13346.6; D4LWN6_9FIRM/3-214; ABC-2 family transporter protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GLLKNNFYGVIENLKIALAFVMLVGVLLLITGEATLLSAFSLIAPPIIALLMVSCVRKESASKWEKYKLTLPVRRKAIIESQYISHTIWSISGVVIVAVFMTLTVFIHGDQYFYYGFRDAITLVLGGGILAILIGAFSYPLYYLWGAEKTEVILIISVIGSIGIVFALTMLVNTFSDGNVSDTLYYISLLVVTAITIITFIFSCVLTKQIFQLast
1 -85.600PF13346.6; D4LWN6_9FIRM/3-214; ABC-2 family transporter protein  ali  100  1GLLKNNFYGVIENLKIALAFVMLVGVLLLITGEATLLSAFSLIAPPIIALLMVSCVRKESASKWEKYKLTLPVRRKAIIESQYISHTIWSISGVVIVAVFMTLTVFIHGDQYFYYGFRDAITLVLGGGILAILIGAFSYPLYYLWGAEKTEVILIISVIGSIGIVFALTMLVNTFSDGNVSDTLYYISLLVVTAITIITFIFSCVLTKQIFQ 212
2 -18.600PF12679.7; E4NSW3_HALBP/4-306; ABC-2 family transporter protein  ali follow..  12  3.VARKEFDDSIRSRWLHGATVFFVLFVGGAA--LSFPGLLALILGFIALSTSYGSITEERETGTMKLSLSLPNSRRDLIVGKLLGRGAVVIVALLAGFLAAFVAMVAT----TGISYGSFVPMIALTVLLAFAFVSIGLGISAVADTNREATLATLGLYLIFGIL............................................... 190
3 -16.100PF12730.7; R6N7Z5_9FIRM/4-186; ABC-2 family transporter protein  ali follow..  15  1.LLWAEFQKLRRSNIILFTVFAIVFTAVFVFLAGTTTA-VWLVLPAVIALLGSYMICREEQDDTIKNLSLIPVNERKLTAAKMIILFLFSILFLLTFSIEMVLHSELSIKIFFDFLKMYLLEGIGVFFAV--------SPIIALVPLKKNYWLALAVAEIYSFA................................................ 168
4 -13.800PF16949.5; B4D3C0_9BACT/40-578; Putative ATP-binding cassette  ali follow..  11  304ALVLKDARLFWRDPAQWIQFMIFFGLLCIYV---LNLAACSLTLSTLTTRFVFPQFSLEGRLLW--LVGLAPIGLRKVLLQKFWTSVFTTTAITVSLMITSSL--MLHLPWLRVGFFAVAIALMSATLSGLSVGLGALFPIVSGFG---GTLCLVASFLYITLFVSLSALPDIARVSKFPWEVPTALPYALALLLSFSVMLFPLLLAIRRVK 535
5 -8.740PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs  ali follow..  12  217AMLIKDFRLILRKNALFPLIVPLVIVMPNVVSIANMPNLSIFIITTISTLSTIDLRIIGNLENVD-FLRMLPLSKRGFVMSKACLIFVISFAASLPAGSIAFIVSQNPFYLFMAFAIPAIVSMLSSLIIFWQKGEEIYFPLLVNFGA................................................................. 372
6 -8.700PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  10  21.........LSSSLGLALLLLLLALLFWLYIVMSDWTGGALLVLYSFALMLII-------------IILIIFIFRRDLLCPLGALCILLLMITLLLIALWNLHGQAL-------------FLGIVLFIFGCLLVLGILLEMLWRLGATIWQLLAFFLAFFLDLILLIIALYLQQNWWTLLVDLLWLLLFLAILI.................. 182
7 -8.240PF03379.13; CCMB_RHOCB/1-215; CcmB protein  ali follow..  11  4.LLSRDLRLAIRAGGGFGLGLAFFLIVVTLVP-ARIASGILWLGALLACLLSLDIFALDFEDGSLDLLATAPIPMEAVVTIKALAHWITTGLPLVLAAPLFAVLLHLPAPAYLWLEVS-LLLGTPALSVLGTFGAALTV------GLKRGGLLLPLLALPLYVPTLIFGAELVRRGAEGLAIEVPLAMLAGITAATVALVPFASAAAIRV.. 215
8 -7.250PF06459.12; M3ZZY1_XIPMA/4218-4479; Ryanodine Receptor TM 4-6  ali follow..  13  163NYLARNFYNLR-----FLALFVCFAI-------------------FILLFYKVTGEAEEEEEDEEHRWDEEDDENTLFDMDEFVLQESTGYMLPTLRFL--------------------AVFHTVISLLCLVGYYCLKVPLVV..................................................................... 262
9 -7.240PF15183.6; D4A897_RAT/1-89; Melanocortin-2 receptor accessory protein family  ali follow..  14  7.....................................................ASVPFTSYEYYLDYIDLIPVDEKKLKANKHSIVIALWLSLATFVVLLFFILLYMS........................................................................................................ 61
10 -6.950PF11241.8; V9XE72_9NOCA/39-222; Protein of unknown function (DUF3043 topsan)  ali follow..  14  83..YVRDIVDSRRNLVGLFMPLALVLIMSMFLGPVVQQYVTLAMFVMMFLMII------------EGIYLGRMVNRK--VRERF................................................................................................................................. 149
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.