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Query: PF13349.6; Q8Y9D1_LISMO/52-365; Putative adhesin, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IKKIAFSSERDASIEWKESTTGKNYIELKGNYSANDKKAIQQLEPVSEDGTSFDITVPEEDDWYNGFGKIYAYGKQKVTIYLTKDTKLADLEVKSHSGDIDVADFKVKKFVSSTNSGELKVTNLEANTAQMATSSGDLTLSNIKANSSIETDSGKTELTNLTGDLEVNGGSGDVNVAGVKAKKLKIAIDSGDIELTSGTVTDLAVLTTSSGDIDANTKGKIQAESDSGSIELAGATNNVTAKTSSGDIDVAFTKQVKNIEINSDSGEVELELPGDFKAIYEASSNSGSVKAPTSDSNTDNRVTVKTSSGDIKIELast
1 -64.600PF13349.6; Q8Y9D1_LISMO/52-365; Putative adhesin  ali  100  1IKKIAFSSERDASIEWKESTTGKNYIELKGNYSANDKKAIQQLEPVSEDGTSFDITVPEEDDWYNGFGKIYAYGKQKVTIYLTKDTKLADLEVKSHSGDIDVADFKVKKFVSSTNSGELKVTNLEANTAQMATSSGDLTLSNIKANSSIETDSGKTELTNLTGDLEVNGGSGDVNVAGVKAKKLKIAIDSGDIELTSGTVTDLAVLTTSSGDIDANTKGKIQAESDSGSIELAGATNNVTAKTSSGDIDVAFTKQVKNIEINSDSGEVELELPGDFKAIYEASSNSGSVKAPTSDSNTDNRVTVKTSSGDIKIE 314
2 -13.400PF07202.13; C3YDC5_BRAFL/3-178; T-complex protein 10 C-terminus  ali follow..  10  7........................................................................................GRRVITFSNGTRKEISADGQTLIVTFCNGDIKQIMPDQRVIYYYAEAQTTHTTYPDGLEILQFPNSQMEKHYPDGTKEITFPDQTIKYLFPNG-DEESIFQDGTVLR--VSKSGDRVVEFANGQREIHTLNYKKREYPDGTVKTVYPDGKQETRYSNGRIRVK-----------DKDGNIVVD........................................... 175
3 -12.700PF09922.9; E6TXV7_BACCJ/159-271; Cell wall-active antibiotics response 4TMS YvqF  ali follow..  25  3...................................................................................................................................................................................................................................GDIQLGKHPDGTNISMGIGSIEVDLTRAENMIDIRSWIGSVEILVPRDMAVKAVADVRIGEVTLNFHDADKRVILYVNLNIGDVEV. 113
4 -10.700PF14783.6; BBS2_RAT/165-272; Ciliary BBSome complex subunit 2, middle region  ali follow..  13  5..................................................................................................................................................................................................................CDFDGDGKSELLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTARYWRIKSKNHAMSIHAFDINSDGVCELITGWSNGKVDAR 108
5 -10.500PF05170.14; Q9JY87_NEIMB/8-615; AsmA family  ali follow..  13  370...........................................................................................SLSVPNLQNWNAELNG-TFDRQTVAAKFRYTHEDAPHLEAAVALQKLNLTPYLDDVRQQNGKIFPDTLAKLSDIEAHLKIGKVQLPGLQLDDMELHADKGHIALSRFKSGLYGGHTEGGISIANTRPATYRLQQNASNIQIQPLLQDLGFHSFSGVIDLTAGGETRKELIRSLQGSLSLNISNGAWHGIDMDNILKNGISGKTADNAAPSTPFHRFTLNSEIS 599
6 -8.150PF01493.19; F8JDA1_HYPSM/1295-1484; GXGXG motif  ali follow..  11  13..............................................................................MLSGEVAKRYGHTGLPEDTIWISFKGTAGQAFGAWVAHGTLDLIGEGNDYVGKGLSGGKLIVRPDPKSSIVPEESIIVGNTVLYG-----AITGECYFRGVAGERFAVRNSGAYAVVEGTGDHGCEYMTGGVVVVLGQTGRNFAAGMSGGIAYVLDEDGNFESRLNKDMVQLE............................................................... 181
7 -8.120PF01203.19; Q6D2J6_PECAS/37-242; Type II secretion system (T2SS), protein N  ali follow..  9  1........................................................................................AGMAIAQATGTLNLQRFSWRTLTLDDVHWKITSGFMPALEIAFKNPEGIEGIIRGWQQPQFYQWRLSVPAGYLFSQLRFIVPEGNVQLNEATVDRSGCQSLDANVIWP-----------------------DARVKTPLGGLVLATPQATLRCE--QGALEASLRQVSSHLQLS---GKGSVTPKGEYRFTGRLSSGND---LPATMKKLLATTGKVDEQGARTLN 206
8 -8.010PF11765.8; M3JXM0_CANMX/11-341; Hyphally regulated cell wall protein N-terminal  ali follow..  15  6.................................................................................................................TSVFAYEVTENTIDRGAISLNVGDITIKS-GAYWSIINNAGKLDVQE-NGGLYISSTSPILALHVTLTSLLDTINNDGTIVFDSRASLTAAGYNLVGYSF-----------NNTGSMFLAASGILSSTMSLTAI---------------TNSGLIVFSQNQRNSGNVELGASYSTITNNGQICLIHEVFVQKNGDGCITA. 187
9 -7.710PF10988.8; Q82V75_NITEU/79-237; Putative auto-transporter adhesin, head GIN domain  ali follow..  12  4....SLVLSGAFNTEIKTSSENRVIIS--------GDSNYVESVEVNSSDGELIIRRPGPGN-----------DNLNVIVESIS---LQKLKI-SGAGSTNIYGDFPDGLSVRSGAGSINIEGQASTLKLNLSGAGNTTARDFTVDNVEIDATG----------------AGNIAVCAKKSVAGSL-AGAVHFKVY...................................................................................................................... 156
10 -7.470PF16911.5; K0EVX2_9NOCA/263-380; Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus  ali follow..  19  2.............................................................................................................................................................................VTLACAVNDQLARDLAAGRIAPPEQFDVMVPVIQAYPGSVLATNWGKIPALETPAGVVVEDFEPGVHLETTLSGPAVALPSPPRSCIITSFRDQLTIDL.......................................... 105
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;