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Query: PF13399.6; E2Q677_STRC2/476-568; LytR cell envelope-related transcriptional attenuator, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst EIGVLVRNGTGGDGALPQRGRASEVSALLQGKGFTQAVADTAVDPRKATLIRFSNVELEGDAQAVAKALGIPLTSVRKSTDVTGIELTVGADWLast
1 -50.600PF13399.6; E2Q677_STRC2/476-568; LytR cell envelope-related transcriptional attenuator  ali  100  1EIGVLVRNGTGGDGALPQRGRASEVSALLQGKGFTQAVADTAVDPRKATLIRFSNVELEGDAQAVAKALGIPLTSVRKSTDVTGIELTVGADW 93
2 -8.600PF05643.11; V5UBV7_9BURK/29-214; Putative bacterial lipoprotein (DUF799 topsan)  ali follow..  11  13..SILVLNESPDIDATYS--VLSQVTVPLGEAGYYVMPVALVDESFRQNGLTVAGDIHQVSPVKLREIFGADA-------------ALYIK.. 89
3 -8.020PF05818.12; Q7MS49_WOLSU/26-261; Enterobacterial TraT complement resistance protein  ali follow..  21  24.IFVSMRNTSGQN-----INLESKIISNLQARGYTIVDDPEAATYILMANVLYCDRKREDNTTGGA........................... 83
4 -7.050PF13693.6; W0HVH8_9GAMM/4-78; Winged helix-turn-helix DNA-binding  ali follow..  19  5......................ADIIAALRKRGTSLAALSRAFGLSSTTLSNTLHRPWPKGERVIAEVIGVPAAEIWPS.............. 61
5 -6.950PF02961.14; C3XZ01_BRAFL/2-89; Barrier to autointegration factor  ali follow..  21  11.....VGEPMGDKPVTALAGIGGTLGGRLEEEGFDKA........................................................ 42
6 -6.460PF08901.11; Q5NN21_ZYMMO/31-187; Protein of unknown function (DUF1847 topsan)  ali follow..  13  57......AKKIGIATCIGLIEESRIFARILKAKGFEAFGVACKVGAVEKTKINIELQYLRQPFERICNPVWQAKLL---NKQKTELNVVMG... 137
7 -6.410PF14229.6; C7RPT7_ACCPU/9-129; Domain of unknown function (DUF4332 topsan)  ali follow..  15  1..................QGATPTISEKLKEAGIT------------NNEQLLAAAAAPAQRKALAGTCGCDPRVILELANRADLARIKG... 60
8 -6.210PF07082.11; Q8YXX2_NOSS1/2-251; Protein of unknown function (DUF1350 topsan)  ali follow..  8  20...IHFLGGAFVATAPHLT---RWLLEQLGNKGYVVIATPFVNTLDHIAIANSVLLNFERTIERLHDSGALRKLYLP--------TYGIGHSM 99
9 -6.200PF13740.6; D3RP38_ALLVD/3-79; ACT domain  ali follow..  15  13..................PGITAALTAILARYQVPILDIGQSTIHNALALGLLVELPRSGTDCGVFKEL........................ 63
10 -6.040PF08823.11; Q9YC63_AERPE/209-282; Putative peptidoglycan binding domain  ali follow..  6  1....TILEREDPSDVVKIEDVAGELEKALAALGYYKGPFTGRASKELLQALESWMAINNFENKIRRD.......................... 63
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.