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Query: PF13416.6; R5SZY1_9CLOT/78-401; Bacterial extracellular solute-binding protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ELAEKYTAETGVPMKVQTAAAGTYEQTLKSEVAKKEPPTLFQINGPIGYKSWAKYCRDLKDTDIYSHLVDKSMAVTDGDGVYGIPYVVEGYGIIYNDAIMQKYFALDGAKAASMDDIKNFDTLKAVAEDMQARKADLGIEGVFASTSFAPGEDWRWQTHLANLPIYYEYKDDNVSDKDAIDFKYSDNFKNIFDLYLNNSCTDPKMVGAKTVEDSMAEFALGKVAMVQNGNWGWSQVAGVEGNTVKEEDVKFLPIYTGVAGEEKQGLCIGTENFFSINSQAKEEDQQASLDFLTWLFSSDTGKDYVTNKLGFIAPFDTFTADEKPLast
1 -120.000PF13416.6; R5SZY1_9CLOT/78-401; Bacterial extracellular solute-binding protein  ali  100  1ELAEKYTAETGVPMKVQTAAAGTYEQTLKSEVAKKEPPTLFQINGPIGYKSWAKYCRDLKDTDIYSHLVDKSMAVTDGDGVYGIPYVVEGYGIIYNDAIMQKYFALDGAKAASMDDIKNFDTLKAVAEDMQARKADLGIEGVFASTSFAPGEDWRWQTHLANLPIYYEYKDDNVSDKDAIDFKYSDNFKNIFDLYLNNSCTDPKMVGAKTVEDSMAEFALGKVAMVQNGNWGWSQVAGVEGNTVKEEDVKFLPIYTGVAGEEKQGLCIGTENFFSINSQAKEEDQQASLDFLTWLFSSDTGKDYVTNKLGFIAPFDTFTADEKP 324
2 -16.400PF02030.15; Y045_MYCGE/1-482; Hypothetical lipoprotein (MG045 family)  ali follow..  10  40LLLERVQEKHPLTFLT------PSNEKLINGFANNTYSVAVASTYAVSELIERDLLSPIDWSQFASDAKDLFIDSIKE---WAVPYFLQNLVFVYRGEKISELE----------QENVSWTDVIKAIVKHKDRFNDNRLV--------------DARTIFSLANIVNTNNNSADVNPKEDGIGYFTNVYESFQRLGLTKSNLDSIFVNSDSNIVINELASGRGGIVYNGDAVYAALGGDLRDELSEEQIPDGNNFHIVQPKISPVAL----DLLVINKQQSN-FQKEAHEIIFDLALDGADQT..................... 339
3 -12.900PF01547.25; CYSP_ECOLI/33-278; Bacterial extracellular solute-binding protein  ali follow..  8  10ALNPPFEQQDKLTIKQSHAGSSK----QALAILQGLKADVVTYNQVTDVQILHD----------------------------GKLIPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGAADK------------------ADGGDKGKTEQFMTQFLKNVEVFDT-----------GGRGATTTFAERGLGDVLI--SFESEVNNIRKQYEAQGFEV-VIP---------KTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQAQT...................... 246
4 -11.000PF13343.6; B3E2B9_GEOLS/96-336; Bacterial extracellular solute-binding protein  ali follow..  8  1..................................DQFPDIIISPGFNSLFE-RPFVERFIQTNRFVSVNDYAGDRHLSALGVCDPLAMNLLVPVVDHRRLG-----------GRPVPRCWADLLK--NSLAIRGHKDGTFCETLLLAIYKDTGV--------------------------------------EGLRTMGRNVRYGWHPSQMVKAALGSSADAPAISVMPLFFAQTLVGKEQYSIIWPDDGALISP--------------------VTMLVKTEKRAELDDLLAFWAGPQVAS--IFSGAFFPAVHPGVDNQ... 223
5 -9.780PF13531.6; A9BZ83_DELAS/51-277; Bacterial extracellular solute-binding protein  ali follow..  12  15QLIPLYEQATGHKVVTSRGASGNAQDSIPSRLARGEQFDIVIL---------DGALDNLAAQGKVEA--GSRVDLARSMIGMSVRKGTPKPDI-LKQTLLDAKTIAYSASASGTYLANELFPRLGVAEQMKGK------------------------------------------------------------------------ATRILSERVGAVVLRGDADI---GFQQVSELLPFKE---------VGPLPDE----------VQQRVFFSAGVATGAKSPETARHLIRFLAAPAAAPIV.................... 222
6 -6.500PF03202.13; C5J5H1_MYCCR/557-682; Putative mycoplasma lipoprotein, C-terminal region  ali follow..  29  8...................................................................................................................................................................................................................................................................................IGIHANKEEDEATKVFVNWFLTAQTGIDFWTQNTSYITPFKETFENTK. 72
7 -6.310PF16461.5; A0A0G3Q840_KLUIN/18-150; Lambda phage tail tube protein, TTP  ali follow..  7  50ATAQGQKSAGDTSFTLAWKPGEQGQISLVQWFEDGLNLTYRIKYPNGTVDVFYGWVSSLGKAVTNKEYITRSVKITNRGKP................................................................................................................................................................................................................................................... 130
8 -6.140PF04498.12; Q9Q8N8_MYXVL/33-248; Poxvirus nucleic acid binding protein VP8/L4R  ali follow..  8  58EAIENYYLDPNNDVLTLMIDNTSLKEISPRKFRQGSIPLFFIFESRKKVDIYKENVNKAVDGSYIKIDDNVALMGKYANAVYGFTHKNELRKLVSDKEIEE--------SGQPLQEPVRLNDFIGLFDGVKKS............................................................................................................................................................................................... 209
9 -6.050PF16460.5; G3XD38_PSEAE/25-161; Phage tail tube, TTP, lambda-like  ali follow..  9  31KYKKGLRTPGQATLGINADPRLASHVRLFQLSEKDGETSVFVLPPARTWFTFEGYVSDFPFDFASNTLVATQATIQRSGAGKWTP............................................................................................................................................................................................................................................... 137
10 -5.940PF09346.10; A6CCT7_9PLAN/22-151; SMI1 / KNR4 family (SUKH-1)  ali follow..  11  5DAIKQFEVVIGRELP------ETLKVLLDTVNGGSPSHDIFSYKDPETYQEIRSCLGALISFNSEDENNILDYLSRPSEGM--APFAAVGNGLKKNSECVFIWLHGNRSGYDECQLADTFQEFIEV...................................................................................................................................................................................................... 130
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.