Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF13478.6; W0PIX5_9BURK/170-312; XdhC Rossmann domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MLLIGAGQLAEYVATMALFSGFAVTVCDPRIEYRKDWSVQGVTLLPDMPDDVVTTFQADARSCIIALTHDPKLDDLALMEALETKAFYVGAIGSRRNNQARRQRLMEHFGLEPEPLARLRGPIGVYIGSKTPAEIAISVMAEVLast
1 -75.800PF13478.6; W0PIX5_9BURK/170-312; XdhC Rossmann domain  ali  100  1MLLIGAGQLAEYVATMALFSGFAVTVCDPRIEYRKDWSVQGVTLLPDMPDDVVTTFQADARSCIIALTHDPKLDDLALMEALETKAFYVGAIGSRRNNQARRQRLMEHFGLEPEPLARLRGPIGVYIGSKTPAEIAISVMAEV 143
2 -8.970PF00670.21; SAHH_DICDI/191-351; S-adenosyl-L-homocysteine hydrolase, NAD binding domain  ali follow..  10  26AVVAGYGDVGKGCAQSLSKMGARVLVTEIDPINALQACMDGYQIVT------METAAPLSNIFVTTTGCRDIVRGEHF-AVMKEDAIVCNIGHFDCEIDVAWLNANAKKDTVKPQVDRYTLANGVHI................ 145
3 -8.240PF03446.15; Q8FTI1_COREF/15-184; NAD binding domain of 6-phosphogluconate dehydrogenase  ali follow..  15  2IGVVGLAVMGSNLARNFARNGHTVAVYNRSTDKTDKLISDYATDGNFIPTKTVEDFVAALEKPRRAIVMVQAGAATDLADAMEEGDIIIDGGNALYTDTVCREKEMAARGRH------VGAGIS---GGEEGALNGPSIMP.. 139
4 -7.990PF02254.18; Q92CZ9_LISMO/5-120; TrkA-N domain  ali follow..  11  1FAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSIATHAVIANSENALRQLGIRNFEHVIVAI-GEDIQSSILTTLILKEMGVKYVTA--KATNDKHAKLLDKIGAD-----RVVHP..................... 116
5 -7.940PF01210.23; GPDA_COXBU/7-162; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus  ali follow..  10  2IAILGAGSWGTALALVLARKGQKVRLWSYESDHVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSFAFHEVIMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATE-LGQVPMAVISGPLATEVAANLPTAVSLA..... 149
6 -6.790PF00056.23; MDH_CHLAA/3-142; lactate/malate dehydrogenase, NAD binding domain  ali follow..  17  3ISIIGAGFVGSTTAHWLAAKELDIVLLDFVEGVPQGKALDLYEASPIEGFDVRNNYADTANSDVIVVTSG-----------------------PRKPGMSREDLIKVNADITRACISQALSPNAVIIMVNNPLDAMTYLAAEV 130
7 -6.750PF05834.12; LCYB_ARATH/84-479; Lycopene cyclase protein  ali follow..  15  2LAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYEGVKKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEANSTVVCSDGVKIQASV--VLDATGFSRCLVQYDKPYYGIVAEVDGHP.......... 167
8 -6.720PF05221.17; D9SB20_FIBSS/15-498; S-adenosyl-L-homocysteine hydrolase  ali follow..  14  259AVVCGYGDVGKGCAQSLRGQGARVIITE-----------------------------IDPICALQAAMEG--YEVKTLDEVVSYADIFVTTTGNTGI-------------ISAAQMEKMKNRAIVGNIGHFDNEIDMAGLKK. 356
9 -6.690PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain  ali follow..  17  137LGIIGFGRIGSQIAKRAKAFEMTPYVFDP---FLTKARAEKLGVTVASLDDVLQVADTKKGVFLINCARGGIIDEEALKHYLREGHIAGAALDVFEEEPVADEELLAFDNV-------IATP---HIAASTKENVAEQVSQEV 292
10 -6.600PF02737.18; Q2YR99_BRUA2/5-183; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain  ali follow..  15  2VGIIGAGQMGSGIAHVCALAGYNVLLHDAAPDRLEKEDLAGVDLAIEA-RKIFAQLCPVLNPEAILATNTSSISITRLASTTDRPERFIGIHFMNPVPVMKLVELVRGIATEEDTFRKS........................ 163
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.