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Query: PF13536.6; YJLA_BACSU/38-305; Putative multidrug resistance efflux transporter, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RFIFMVPFLCLIVIMRGTFTPLLLEMRKKPFYWIKWSFVGFVLFYAPITFAAAYGPGWLIAGTWQITIVAGVLLSPLFYVKQDMPGGPQLIRQKIPLVSLGTSVIILIGAALIQLQHAESLSGRMLLFSVLPVVIAAFAYPLGNRRMLEEYGGRLDTFQRVLGMTLASLPFWLILAAYGWWSDGLPTASQTVQSFIVAVSSGIIATVLFFWATDMVRDNPQKLAAVEATQSGEVIFALLGEIVLLSGVFPSLLSFAGLFIIIAGMMLHLast
1 -127.000PF13536.6; YJLA_BACSU/38-305; Putative multidrug resistance efflux transporter  ali  100  1RFIFMVPFLCLIVIMRGTFTPLLLEMRKKPFYWIKWSFVGFVLFYAPITFAAAYGPGWLIAGTWQITIVAGVLLSPLFYVKQDMPGGPQLIRQKIPLVSLGTSVIILIGAALIQLQHAESLSGRMLLFSVLPVVIAAFAYPLGNRRMLEEYGGRLDTFQRVLGMTLASLPFWLILAAYGWWSDGLPTASQTVQSFIVAVSSGIIATVLFFWATDMVRDNPQKLAAVEATQSGEVIFALLGEIVLLSGVFPSLLSFAGLFIIIAGMMLH 268
2 -14.600PF06027.12; S35F2_HUMAN/35-334; Solute carrier family 35  ali follow..  10  45NYCLLFLIYTVMLAFRSGSDNLLVILKRKWWKYILLGLAANYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFI----------------LHARYRVIHFIAVAVCLLGVGTMVGADIEDNSGSDVLIGDILVLLGASLYAI-EYIVKKLSRQEFLGMVGLFGTIISGI---QLLIVEYKDIASIHWDWKIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLGI-----LTADLYSLFVGLFLFGYKF-SGLYILSFTVIMVGFILY 298
3 -10.300PF04142.15; O16658_CAEEL/7-326; Nucleotide-sugar transporter  ali follow..  14  94.........................................AIMYVIQNNLLFFALKKLDAATYQVTYQLKILTTAIFSV--------TMLGKSLHRYNWMALILLTAGVALVQYPSGDSTTSKSNILGLGAVLAACFSSGFAGEKILKTSKVSLRNIQLAFFSVFGALLVCWLYDWQAISDDGFLRGYNGVIWIVVLLQAGLVIALVVKYADNILKG----------AVSLSIILSSFTSWLVLGDLTITTTFAIGATVVIFATFLY 319
4 -9.740PF00892.20; YDED_BACSU/160-296; EamA-like transporter family  ali follow..  16  3................................................................................................................................AVVWGVLSGFAAAF---LYAVGLLNKFDSLVVVGWAMIIGGFALGFIHPPWQLDFQRLTAEAYAYILFVILFGTMIAFWFFIKSLESLSPKETSLLG-----SLEPLSAVVTTVVWLKAPF-GSFQWIGAICIIGITLI. 134
5 -9.670PF16913.5; PUP2_ARATH/6-340; Purine nucleobase transmembrane transport  ali follow..  12  81......................................IVVGLLVGFDNYLYSYGLAYIPVSTASLIISAQLGFTALF--------AFFMVKQKFTPFTINAIVLLTGGAVVLALNSDSNETHKEYVVGFIMTLGAALLYGF-VELSYKKSGQRITYTLALEFQMVLCFAATCVCLVGMLAAGDFKVKHALSLYYVVIVFTAIIWQAFFVGAIGLIFCASSLVSGIMVS--ALLPVTVILAVICFQEKF-QAGKGVALALSLWGSVSY 325
6 -8.660PF05653.14; NIPA2_HUMAN/8-302; Magnesium transporter NIPA  ali follow..  11  46.........................YLKEWLWWAGLLSMGAGEVANFAAYA--FAPATLVTPLGALSVLVSAILSSYF------------LNERLNLHGKIGCLLSILGSTVMTLNEMSHKLGDPGFVVFATLVVIVALILI---VVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKPVDDVIGTLSGFFTIIVGIFL. 288
7 -8.130PF03151.16; D7TJE0_VITVI/103-390; Triose-phosphate Transporter family  ali follow..  10  68......................................IPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAA--------SQFILGQSIPLTLWLSLAPVVLGVSMASLTELS-FNWIGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALIV-CIPPALIVEGPQLMKHGF-AKVGLTKFLSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNV--LKRVFVIGFSILVFGNKI-STQTGIGTCVAIAGVAMY 287
8 -7.330PF10639.9; A7SF34_NEMVE/12-127; Putative transmembrane family 234  ali follow..  20  47..................................................................................................................................................................................................YMVPFLLNQSGSVLFYLTLGSADLS----LAVPITNSLTFIMTTLTGR-ILGEESCKTETYIGMLLVVGGVSL. 114
9 -7.270PF08627.10; CRTP3_DICDI/55-397; CRT-like, chloroquine-resistance transporter-like  ali follow..  14  39.YGYLPIFLVAMWYKMYCTSDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIF------------LRERYSLFQLGGAAVILGGVIVSLIPSLGGSSGGNILFYNFFYLISVIPGALSNDIAFQSIDMDLQFWDCLYQSLFGSILFPVNNWLPPPATIKFTEIIPSMRDGALCLGG-WIIVLIYMTVNIAYNIFILLVLKHAGATVYSIANTVILPLTNIFFSIHSALSVAGLLLILFGLGGY 343
10 -7.260PF08449.11; S35B4_DROME/6-325; UAA transporter family  ali follow..  13  70..........................................ALFFGANVCNNYAFNFNIPMPLHMIFRSGSLMANMI--------GIVLLKKRYNLRQYSSVAMITAGIILCTLVSSGDVKDNTHTVGIGLLTIALLV--MGIYQEVIYKKYGKHPSEALFFTHMLPLPGFLIMAGNIVQH--EWKFPLMLFYLLCNVVTQYVCISAVYVLTTECAS-----LTVTLVVTLRKFVSLLFSIIYFRNPF-TLNHWVGTILVFFGTILF 316
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.