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Query: PF13550.6; N0B519_9RHIZ/827-991; Putative phage tail protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DDTMSARDALQPLSLAYFFDSIESGGKIVFRHRGRAEPQMTLTAYGLVEEHADDPLYEVTRAQETDLPASAKVRYISSADVYPQAVAEARRLTGASGRIAEADLPIVLDDGLAGSLVESWLYETWAARERASFKLPPSALALEPGDVVSVDIAGRNRLLRLTDVTLast
1 -84.100PF13550.6; N0B519_9RHIZ/827-991; Putative phage tail protein  ali  100  1DDTMSARDALQPLSLAYFFDSIESGGKIVFRHRGRAEPQMTLTAYGLVEEHADDPLYEVTRAQETDLPASAKVRYISSADVYPQAVAEARRLTGASGRIAEADLPIVLDDGLAGSLVESWLYETWAARERASFKLPPSALALEPGDVVSVDIAGRNRLLRLTDVT 165
2 -12.800PF16467.5; D4KC30_9FIRM/814-917; Domain of unknown function (DUF5048 topsan)  ali follow..  7  17...................................................................................................SGSEFDGYTSDESAMTVCKYTLWKNCRLTDSITLSMHMI--WLDVNEKVKYAAKDIAVEWIIKKID 85
3 -10.700PF14594.6; R4KVR5_9FIRM/11-342; Siphovirus ReqiPepy6 Gp37-like protein  ali follow..  14  145...KNLADELEQISTLTGLGW-FNARKWVFDIYNGRDFSASQQNPLVIFSPEFDNIRSQEFIDSLVGFGNYAIVAGRDEGANREIMMLGSDATGLDRHVIFVDARDVKDTADLPAKGEAKLAEHQRVISFQAEVLTAGPFKWDVGDVVTVQNKNVTMDTRITEVQ 317
4 -8.630PF06605.11; Q8Y4Z4_LISMO/34-333; Prophage endopeptidase tail  ali follow..  8  112.GNNNYLTLIDQLLDDYGVVVIPDNRHLVFKPREIYG-----AKTENFIRYKYNTDEASFDIDTLSLKTKIKGYGKVDSNGNNYFSPITYTSPEVEKWGIRWQEPVSDERYTVAGNMQRRLKLELQDYPATTGSVILKNDYCEKGDYVLFIYEPLGIDVQIVAYK 273
5 -8.480PF16222.5; Q72FR5_DESVH/24-203; Domain of unknown function (DUF4881 topsan)  ali follow..  11  14DKQAKTVTLIQDKLAEPMNPDYSTLPPHTYKLPADPAEMGPEPKAGLRMKLDTKANIVKIFNPKTQAFEDITITVIDLQQNIDRQHPLVFDKATDTAK----KFPMVDRDKKTITI-------SGRQKMLCTFSVPDEYFSMEAGDEVRVYYKTEGVSLRFMNIS 173
6 -7.330PF12969.7; C6XAB6_METGS/91-254; Domain of Unknown Function with PDB structure (DUF3857 topsan)  ali follow..  9  7.......................................................QTTAYSSNALESVSQVYIQFNPAFEQLALHAIRVWRDGKAIDLTKKVKLDLLRRESNLEK-------SMYEGDVTAIGILP----DIRVQDIVELE.............. 91
7 -7.050PF08612.11; A5DLF3_PICGU/8-235; TATA-binding related factor (TRF) of subunit 20 of Mediator complex  ali follow..  9  9..SNATPDTILQFHDQLSNELPVLKGNWNFSFKIFRNNPYSIPPEKALELSQSDESKYLHTWSPSYLPGTGVALINKSSSCVFSQVIAEEAGNENVEFTIPDAH-TTGLNDPFDYFVAQKLQSMWTQRQTVKGDGGEIY-ELENERIIRTSNVFLHGVFKLIQIE 177
8 -6.840PF06940.11; R5P859_9BACT/27-194; Domain of unknown function (DUF1287 topsan)  ali follow..  10  1..............................................................EAACQIENPAIQYSYPNGDVPVDKGVCTDVVIRAYRKLGIDLQKNVHEDMKAN-RRVPNLMTFFSRYGEVLEITDRPEDYKQGDIVCWDLGRGILHIGIVS.. 126
9 -6.520PF11604.8; Q5P5T9_AROAE/133-199; Copper binding periplasmic protein CusF  ali follow..  11  2......................................................................................................TVKKVDKAAGKITISHGPLENLGMPPMTMVFRATDPSMAVREGDRIRFAAQRVDGVFSVTKLE 66
10 -6.320PF01176.19; B8E1F5_DICTD/9-72; Translation initiation factor 1A / IF-1  ali follow..  18  1.....................................................................................................IEVTGTVKEALPNATFKVQLDNGLEILAYISGKMRMNFIRVMPGDRVKVE.............. 50
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.