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Query: PF13599.6; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst EFISCKLLGTNLSETTMNHVLLHDCNAGYINLAMSKMNQVRFAHSQLRNGSLNDCRFSSVAFESCDLVEADFSHAPLRGIDLast
1 -48.400PF13599.6; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies)  ali  100  1EFISCKLLGTNLSETTMNHVLLHDCNAGYINLAMSKMNQVRFAHSQLRNGSLNDCRFSSVAFESCDLVEADFSHAPLRGID 81
2 -20.600PF00805.22; A9C0H0_DELAS/87-126; Pentapeptide repeats (8 copies)  ali follow..  22  1..................................ANLTDALFCQSDLNNTNWELAKLASARFLEVKLTGARFGG....... 40
3 -7.750PF05264.11; Q9GSA6_CHOFU/1-138; Choristoneura fumiferana antifreeze protein (CfAFP)  ali follow..  30..ANSQCVKSTATNCYIDNSQLVDTSITRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISG.. 107
4 -7.320PF16318.5; Q8A8Y7_BACTN/184-327; Domain of unknown function (DUF4957 topsan)  ali follow..  73............AGIVQQPYVFQSCTIKDLP-NGYALSSLSITDCLVSIAFNGQGWIKDLSFSNSTIYYT........... 144
5 -6.960PF12541.8; R6DEH5_9CLOT/2-276; Protein of unknown function (DUF3737 topsan)  ali follow..  95..........RCHHVALENIVFTDATETLWNCDNVSIHGMSAKGDYFSNMEIEGLTLDGYSFDGCK--NVTIRNSHLLSKD 168
6 -6.600PF06403.11; Q9YHE0_PETMA/1-138; Lamprin  ali follow..  3....ATMQALLVIALLHLATATPVVTKHKVSTFSTGFLGHPVGGLGYGGLGYGGLGYGGLGVAGLGYGGLGYPGAALGGAY 79
7 -5.800PF13306.6; A2EUR9_TRIVA/224-352; BspA type Leucine rich repeat region (6 copies)  ali follow..  17  8.FHSCKMTAISIPSTCIGENAFSECRISNHAFYCTNISSIIVPRLSIGNSSFELSNLKQMVFPSSEIGSFAFSKTQLKSIE 110
8 -5.650PF01696.17; E1B55_ADE12/96-479; Adenovirus EB1 55K protein / large t-antigen  ali follow..  16  126.FINVRFAGDKFKGIMFTCLVLHGVYFLNFS-NKVSARGCTFYGCWLVGRPKSKLSVKKCLFEKCVLALIVEGDAHIRH.. 214
9 -5.590PF05554.11; Q1AES1_9RHAB/1-122; Viral hemorrhagic septicemia virus non-virion protein  ali follow..  3...........................TQSAHSTTSFSPLVLREMIAYRLTFDPSNYLNSDLDRSEISATDFFETTLSRV. 55
10 -5.480PF13576.6; Q82R80_STRAW/296-344; Pentapeptide repeats (9 copies)  ali follow..  18  1...............................FDRATFFGARFVEATFRGTSFVSATLQSANFLGVTFERAKFESS...... 48

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.