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Query: PF13729.6; F7YS53_VIBA7/48-300; F plasmid transfer operon, TraF, protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PFYNPALVAVYRNNDTFGVLFPAVGGAARDPDKSLKSIDDLQDSIKAFENSGTPNQSDIDKLNQYLDQLADDKPLAASAGIGMAIAIPLDLVSLNIFTRGHAEVIARSDIAANTGSSGTDVENRYKNSTVDLIAFGYSEFGLALAKIYNIRGQQFSFGITPKIQQLRTYKQNVSVKEFDLADYDKSETNDNAFNLDLGAVWLINDFRVGVAVKDLFAQELKTIDGLSSYDLDTQVTISGGYVTEFFTAAIDLDLast
1 -95.800PF13729.6; F7YS53_VIBA7/48-300; F plasmid transfer operon, TraF, protein  ali  100  1PFYNPALVAVYRNNDTFGVLFPAVGGAARDPDKSLKSIDDLQDSIKAFENSGTPNQSDIDKLNQYLDQLADDKPLAASAGIGMAIAIPLDLVSLNIFTRGHAEVIARSDIAANTGSSGTDVENRYKNSTVDLIAFGYSEFGLALAKIYNIRGQQFSFGITPKIQQLRTYKQNVSVKEFDLADYDKSETNDNAFNLDLGAVWLINDFRVGVAVKDLFAQELKTIDGLSSYDLDTQVTISGGYVTEFFTAAIDLD 253
2 -22.800PF03687.13; Y865_TREPA/77-385; Uncharacterised protein family (UPF0164 topsan)  ali follow..  11  59.EANAAGSAAFPYLL---------------------------------------------------VGGFHFARVNQSHTDTIALVHSIGRTGYGFSASVQYPYLTMEGKAVG----------------------GVAIFNVAHRFLSAYRFKGISVGTNVKVGYRDSSAGGERNKKNQGG------KKHVVVTADIGLQGTWSNLWVGGTVKNVGLSGSSMSGGRTVHATNSSFILACAYQPRWFLFGTGIE 250
3 -16.200PF11751.8; A5FJD4_FLAJ1/7-280; Type IX secretion system membrane protein PorP/SprF  ali follow..  13  73..................................................................................................................................KIGPTNENTLSADLSYSIPTSESKLSFGIKATANLFNLDASKLSYEDQNDELFQDI-KNKFTPNIGAGIYWHSDRAYLGLSVPNFIETNRYDNNDVAIFKEKINYYFMAGYVFN......... 186
4 -15.100PF03349.16; Q9KT62_VIBCH/16-428; Outer membrane protein transport protein (OMPP1/FadL/TodX)  ali follow..  11  41.SRNPAAMALFDEMA------LSLGFETITTMIDVKNVSYRGVLGNSVSVQDTDDVGGTSVAPNIHLIVPVNEQFAWGVNAYSNFGTKTE--------------------------------SDSYPASEYGGLTDVKSFNLGLAGSYRVNKESFGAGLDLIYGQGTMKRIATVIPARGTSLLNVDKADGWAVGFNLGTVYEMENNRFGLSYRYSPEFKAKDDGQEITLPLPDIAEFSGFHKNTQFAVHYSVQ 274
5 -10.900PF16961.5; Q5LG58_BACFN/59-257; Putative OmpA-OmpF-like porin family  ali follow..  11  72...............................................................................................................................RAVADAQSFAYNVSAGVDRYFNIKRPNLMTGIRVGF---AYGENEMKYDEETSMGKSIAESWNLRGALTIGVDYFVPALYIGAQIDQAGLGDLSADSHNYSVLAAPTFKIGFKF............ 199
6 -10.800PF01856.17; O26005_HELPY/59-248; Helicobacter outer membrane protein  ali follow..  13  54.......................................................................................................................GNTLTERDSYQGQYYVNLFTYGVGLDTLWNFVNKEFVVGIQLAGDSWATSISKEIAHYAKHHSNSSYSPANFQFLWKFGVRTHIAKLELGIKVPTITHQLFSLTNEKGQADVRRVYAFQISYLRDF........ 190
7 -10.300PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein  ali follow..  50............................................................................................GINVKYRYEFTDTLGLITSFSYANAEGEQKTHYNDTRWHEDSVRNRWFSVMAGPSVRVNEW--LAGVSYARVSSFAGDYVTLTSDEGKKQEHSGRRSHTALTYSAGVQINPENIVVDLAYEASGRGDWRTE----------AFIVGTGYR........... 198
8 -9.400PF12099.8; R5KMA1_9BACT/7-191; Protein of unknown function (DUF3575 topsan)  ali follow..  69..........................................................................................................................................TLMPEYRYWFCQSFNGWFIGAHLMGGQFNMGSVDLPFGVFNELEDHRYEGWYAGGGITAGYQWPLSKASLGVGYDYIQYDKFRCGECGERLKSDHTTKLALSV............ 181
9 -9.060PF17251.2; Q6MB36_PARUW/28-317; Protochlamydia outer membrane protein  ali follow..  55..........................................................................................SVNWGWIVDGDYKRTFSTYKSPVIAGFGSEDFVVTDTRRDVIDENFVYDLSIGVGYPFYFSDCTLALGYALDSQHISVEQGGLGFDSTGAVNPNSYGSYTHKFGVDFNYRPYGETWNLYAEVEELLSQHHIHRSKHADYDFSNDWTAGLCVKFQDWTASRRHG 251
10 -9.050PF09411.10; A9IIE7_BORPD/46-180; Lipid A 3-O-deacylase (PagL)  ali follow..  11  36..............................................................................................................................SANGSRSPSHVWQFNAIPMFRWWMSER-VEAGIGATAFTHTKFA-------------DERISTAFQFGDHIGMGFLVTHNRLGLRYSHFSNASIKRPNPGLDV-----LQLTYTYQ........... 135
11 -9.010PF03922.14; Q98A70_RHILO/45-230; OmpW family  ali follow..  12  39..........................................................................................ELDISYFFTDNIAAELILGTTYANIDGQGAIGGLGKVGKVWLLPPTLTQYHFTDFGAFE-----IGAGVNYTIFY----------HQQVGSADDLKVKNTFGAALQVGFDYMVQHWGVNFDVKKLFDVTVAGAKLTGKAKLDPVIGAGLTYR........... 185

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.