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Query: PF13744.6; A9IKY1_BORPD/13-92; Helix-turn-helix domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst VLRDLGFDDAEELSAKAALALKLNELIDHRGLSQTEAAAITGMTQPKVSQVRRYKLQNISLERLMQALVSLDQRVEIVVQLast
1 -42.400PF13744.6; A9IKY1_BORPD/13-92; Helix-turn-helix domain  ali  100  1VLRDLGFDDAEELSAKAALALKLNELIDHRGLSQTEAAAITGMTQPKVSQVRRYKLQNISLERLMQALVSLDQRVEIVVQ 80
2 -17.000PF13560.6; E2Q1W5_STRC2/16-79; Helix-turn-helix domain  ali follow..  10  1.................HLGTELRQLRQAAGLKANQVVRRLIWSPSKLTRLETGENATVEPSDVIALCDMYGAD...... 57
3 -15.500PF05339.11; Q9CGT0_LACLA/1-68; Protein of unknown function (DUF739 topsan)  ali follow..  18  7.....................SLLGKITEKCGTQYNFAIAMGLSERTVSLKLNDK-VTWKDDEILKAVHVLELNPQ.... 60
4 -15.400PF13443.6; C7PBR9_CHIPD/6-68; Cro/C1-type HTH DNA-binding domain  ali follow..  18  1.....................NLDVMMAKRKISLNELSERVDLTLSNLSILKTGKAKAIRFSTLEAICRALDCQPGDILE 59
5 -15.100PF01381.22; O74027_METWO/12-69; Helix-turn-helix  ali follow..  21  2......................AAVNLTKQGYSQKEIAEALDMNRSTVSHYLNGR--NLSWKSIEVAKIITEMCPR.... 53
6 -12.800PF08667.10; Q7P0M9_CHRVO/4-177; BetR domain  ali follow..  13  1.............DFKSLFLVRLAQLLDATGIAERELRDLLGIDLSSANRKLKGG-IAFNIEELAKVAKTIHCSADYLL. 69
7 -10.700PF07022.13; Q6K1G0_9CAUD/16-169; Bacteriophage CI repressor helix-turn-helix domain  ali follow..  12  1.................GVLERLMSAYGVK--MQKDLADLLGIAKHSVSGWVQRD--AIPGNVIVRCCLDTGADIN.... 55
8 -10.500PF14590.6; Q086X3_SHEFN/5-170; Domain of unknown function (DUF4447 topsan)  ali follow..  15  10....................IEIQCLRQSLGLTTEQVASITKASNEDVMAWESGEAPIPAQKKLLEIDDIIEMQVLNTSD 71
9 -10.300PF05269.11; RPC1_BPP22/1-91; Bacteriophage CII protein  ali follow..  14  1......MELTSTRKKANAITSSILNRIAI--RGQRKVADALGINESQISRWKGDF-----IPKMGMLLAVLEWGV..... 62
10 -10.200PF15731.5; A1VWM6_POLNA/1-131; Antitoxin component of bacterial toxin-antitoxin system, MqsA  ali follow..  22  73.....................YIARVRKKLDLDQRQAAEIFGGGVNAFSRYENGKRPSLALVKLLKVLER.......... 122
11 -9.450PF04814.13; H2SDC5_TAKRU/36-217; Hepatocyte nuclear factor 1 (HNF-1), N terminus  ali follow..  16  125...............SSMVKEEIKAFLGNRRISQAVVAQVTGISQSRISHWLLQHGSDLSEQKKRAFYR........... 178
12 -9.170PF13693.6; W0HVH8_9GAMM/4-78; Winged helix-turn-helix DNA-binding  ali follow..  9  5....................ADIIAALRKRGTSLAALSRAFGLSSTTLSNTLHRPWPKGE----RVIAEVIGVPAA.... 56
13 -9.110PF08965.10; X2GUQ4_9GAMM/1-117; Domain of unknown function (DUF1870 topsan)  ali follow..  12  4....................LELQAYRRFLMLKVSEASEYIGTDASTWHNWEKGT-VPVPQYVVTAMQELKKLRTD.... 59
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.