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Query: PF13879.6; E4X1F1_OIKDI/28-123; KIAA1430 homologue, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst HRNKVADIKPQIDNKAPRTYMHMHLKLKKLQVEEERLAVVERDNRILLEKMSYIMRTKGKVDNWNQYHQKSLNKSSRQRELLRVTHENQAILKRISLast
1 -62.200PF13879.6; E4X1F1_OIKDI/28-123; KIAA1430 homologue  ali  100  1HRNKVADIKPQIDNKAPRTYMHMHLKLKKLQVEEERLAVVERDNRILLEKMSYIMRTKGKVDNWNQYHQKSLNKSSRQRELLRVTHENQAILKRIS 96
2 -8.180PF15742.5; F1SF94_PIG/282-665; Domain of unknown function (DUF4686 topsan)  ali follow..  12  282HKAKLRRVRDHLDERIRQLESDVRALKRQAEKEKEFQKQVIAQNDTLSLEKRKLREQLVRQEGIIDKNRWMLSSVQKRVLF--LDQENKHFLENN. 381
3 -7.640PF08614.11; K5XJL3_AGABU/10-204; Autophagy protein 16 (ATG16)  ali follow..  10  89YKTQGQNAQRLLAMN-----ETLREKEELARLDTENLRKTKDELAVLRRKVDQHAELMQEKDRHDEISTLQLELGQIEDRNQTLLKDNAKLLQR.. 182
4 -7.380PF11166.8; Q2FYD6_STAA8/2-99; Protein of unknown function (DUF2951 topsan)  ali follow..  16  5............................KRHEQDWRLTRLEENDKTMFEKFDRIEDSLRTQEKIYDKLDRNFEELRRDKEEDE-KEKNAKNIRDI. 72
5 -7.380PF15244.6; W5NYT1_SHEEP/9-420; Spermatogenesis-associated protein 7, or HSD3  ali follow..  18  47HYNKILSAKAAVDCSVPLS-----MSASIKYADQQRREKLKKE..................................................... 84
6 -6.940PF06769.14; YOEB_ECOLI/5-84; YoeB-like toxin of bacterial type II toxin-antitoxin system  ali follow..  8  7..................................DDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYA... 65
7 -6.640PF03904.13; YP2A_STAAU/1-230; Domain of unknown function (DUF334 topsan)  ali follow..  9  11..KDIKNNKENPNTQMNSKSTGTPSSSTQNSLNNEELSELKRQNKLIVKYLAEIQENQKIREKEQKEITSELKEATKDFRDKSLKIRN........ 96
8 -6.530PF08172.12; S8AJE9_DACHA/447-697; CASP C terminal  ali follow..  15  103QRDRYKVRNSQLEDE-------LSRTQETVTSLRQEISSLQKDNLQLYEKTRYISSYNRQPTKSNAVGVHNNPTASSGLSLDRYRRESVRAFNRMG 206
9 -6.170PF17178.4; I2B9L9_SHIBC/27-213; Membrane-associated sensor  ali follow..  15  156......................LAGGWYILQRWFSEAWYRYQENRLLIARLDLL.......................................... 187
10 -5.960PF15908.5; H3AQS5_LATCH/557-711; Hyaluronan mediated motility receptor C-terminal  ali follow..  14  44.................................QEQLDAFEAEKNCLLNENGAAQEELNKLSDAYAKLLGHQNQRQKIKHVVKLKEENSQLRQEV. 105
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.