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Query: PF13970.6; A3HUB0_9BACT/7-342; Domain of unknown function (DUF4221 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IFSLLLFFSCGRSKDSKSSNASNLFENLTYSIDTVVVDSKGEIINLSNGLRYFDISVDESSLLLFDRKQTIFQEIDLNDLKLKATYPYEFEGPNGIGKAMNFQILPDRTLFIPTFSKSGIYNLQGKLVSRLNFKPTEAEGLEETDPFTLINAILINPKSGLLYSLPGDYISGVKDLAIIDPDNNKVKLIKLPEMDIAGDFKVFWNTENGKAIEMEEYSLALFDETLIITCTVGSGIYTYNTSNDSLNFVDLPHKIIPTKKSGEILNEVTEESVFWDEYRKVASQVSYYELKWDKEKERFYRFASRTFLGEKESDPVRDEVYLLAYDEGFNVLGETKLast
1 -114.000PF13970.6; A3HUB0_9BACT/7-342; Domain of unknown function (DUF4221 topsan)  ali  100  1IFSLLLFFSCGRSKDSKSSNASNLFENLTYSIDTVVVDSKGEIINLSNGLRYFDISVDESSLLLFDRKQTIFQEIDLNDLKLKATYPYEFEGPNGIGKAMNFQILPDRTLFIPTFSKSGIYNLQGKLVSRLNFKPTEAEGLEETDPFTLINAILINPKSGLLYSLPGDYISGVKDLAIIDPDNNKVKLIKLPEMDIAGDFKVFWNTENGKAIEMEEYSLALFDETLIITCTVGSGIYTYNTSNDSLNFVDLPHKIIPTKKSGEILNEVTEESVFWDEYRKVASQVSYYELKWDKEKERFYRFASRTFLGEKESDPVRDEVYLLAYDEGFNVLGETK 336
2 -19.500PF15869.5; Q8AA06_BACTN/27-323; TolB-like 6-blade propeller-like  ali follow..  10  28..........................................................GDILYAGDFKGDSLYCYSLSEQRFVNQMLPQGQGPDEFLSPVEFFLSDSSFIHNRWHFTAQNYIFNTKDFSIQRQGELIHLPMSIDRVYPISESRFIASG-----------VFEDCRFLILDNDGNVISKCG----DFPNYQSGEENIPNTAKGMFHQSQFGYNTDRKRLACATNNVLELWDYKPETLTLHKRLLLAPYHYQFNSSPDGVYAESDNPD------AELGARGIAVS--NNYVYVLYNPNTNRMHEEQKETLNSEIWVFDWEGKPIRKIL 284
3 -18.200PF17170.4; S0GL13_9BACT/11-337; 6-bladed beta-propeller  ali follow..  11  1...ICFLFSCSLPQNRNLDEANNNDFYSMFDVTYISLETQSDNEIGQISRILYH----YGKYIVTDMLTNRVFIFN-EDGKYYSKIDAIGNGPEEYVQITDITI-YNERIKVLDAGKIVSYDLEGYSVGETKLPVVPLHFCQVEKEKYAFDFQRCSSEKEWQYNLFISSEYLGEISKFLPYDKPLDVCFSPRV------------------------TLQEIDDEVLYIPLYSPTIYTIDSFEKPRYTFDFGDKWVDQDFVDIEWKDAGEFMNKLSR-----TKYVYYFNLLESGSHIYAEFMY------------KENKYRLVIDKETDHL.... 295
4 -11.900PF16288.5; Q8A398_BACTN/40-140; Domain of unknown function (DUF4934 topsan)  ali follow..  11  3........................LSDFGNTVRYVPLETNEVCLIGNNPHIALL----EDKIVIATK-DQCFLFHK-QTGKYICSIGHIGDDPSGYSSTNYWIDDAGLFYFFRAPDQLLKYNQKGEMTG............................................................................................................................................................................................................... 101
5 -11.000PF06977.11; Q87UK6_PSESM/58-310; SdiA-regulated  ali follow..  10  28....................................................LSFDPDRKSLFTVTNQNPELVELSL-DGRVLRRIAL-----VGFGDAEAVEYISPGVYVISDELRLIQIHVDDSTKSLNAADAEQLTLGLTASGNKGYEGLAYDSRGKRLFVARERDPVQ--------IEVRGFPRVNADAPGNLQVITDGKRDGKLSVRDLSSLQFDEVSGHLLALSDESKRILELDTTGRPIGSGSLKEGDMGLSKSVPQAEGMAMDDE--------------GTLYLVSEPNLFYVF.................................. 252
6 -10.900PF14466.6; R6Y7E1_9BACT/10-135; PLAT/LH2 and C2-like Ca2+-binding lipoprotein  ali follow..  16  5LFLGLILVSCSDDDDQGGVIDTGIH--------KIVVEQSGDIDAFELGLVFGAVNTTSGPTKLYDEDGKYLGESHSVTRMEDAKVSCQTGDDAFFMTCAGSVTSTSDVSGKKLKVLVTAY-IDGKEVNQL............................................................................................................................................................................................................. 126
7 -10.200PF16287.5; R5CH52_9BACE/55-450; Domain of unknown function (DUF4933 topsan)  ali follow..  13........GVKYRPTIIRTGAKVL--DVPAALKNVRALKPNELGTLIFHPTGYEGYGLGAELNPVDDDYEGICLLD-KDMKLRKVLFKNEVEISEMKMGDGIGYGIRSKRRLSSSTRQLRGLYAGQETEADDRLRYEYAVAILPWDVLAEAAEPWTPDHLPSKLPIGRTQGNAFAVTA-FSSRFCTFGQKGDTLCRFTVNDAEDYVPTSTYRSGEDTDVYHYDGKLLLRMAYDNTVYELTDVSTLKAVWRLD------------TLKRPTGKYVVGSLNNSLDGYYLINNWIETNRYLLVQLSR-SYDSPNARTQGTVTLHTLVYDKQTGDFFSLP 343
8 -10.000PF07433.11; Q1GEI0_RUEST/56-356; Protein of unknown function (DUF1513 topsan)  ali follow..  55...................................................HGVFSPEGEVLYTTENDAGVIGVWNAGDYHRIGQFSSGGIGPHEM------LLRRDAPGLVVANGGLSYLRLSGEIQHQMELPADLHK--------NSIRHIAVRSDGAVGFAMQWQGDLGADVPIVGLHQPGSAPRLMAEDDPRLRNL----------NGYGGSIAFSGDETAIAVTSPRGGVVQVMDCTSGALQA-EHALSDVCGLAPLKDGFLVSTGTGIMAQIGTEVTTLTQAPLAWDNH......................................... 297
9 -9.440PF02239.16; NIRS_PSEAE/170-563; Cytochrome D1 heme domain  ali follow..  2........................................................DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDMSASGARSVE-SSKFKGYEDRYTIAGAYPQFAIMDGETEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-----KETGKVLLVNYKDIDNLTVTSIGAAPFLH----------------DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY--------DTTFNPDARISQSVAVFDKNLDAKYQV. 321
10 -9.200PF03022.16; Q9VJI5_DROME/116-402; Major royal jelly protein  ali follow..  1.............................VSPFRVRADRCGRLWVLDSRISGVLEQTKIY--------AAQLLVYDLHNDDLLRRHVLPAGQLKQGSLLANLAVEDSDCAYAADLGSPGLVVYSWKDEESWRVQHHFFHPDPMAGNFSINGIEFQWDDGLYGLALSKPLETGYATLYFHPLCSTTEFSVDTSILRNKTLATSPMIYREFKVLGSRGPNTQAGAE---FLDPDTGVLFYALPNLNEVACWRTATDFSHSSQSRIHMNNDTLV----------------SDIKVDDQKRLWVLSNQLPVFIYDELYAGSINFRILTASVK-EAIENTA 286
11 -9.170PF06433.11; DHMH_METEA/68-409; Methylamine dehydrogenase heavy chain (MADH)  ali follow..  5......VFVYDPKHFAAISQFYMIDGDTARVVGTADGGFLSNPV----------VASDGSFFGQASKRTDYVELLDPQTNNPIADIELPNSPRFLVGTYPWMTALTPNNLLFYQFPAVGVVDAGKKFDRMIEVPD-------------------------------YHIFPSSNDTFFMHCRDGSLLKVGIGADGKSQTKRTEIFHKENEYLINHPAYSPKSGRLVWPTY--TGKIFQIDLSSQDAKFLPAIEAFTDAEKKEGWAPG-------------------WQQVAYHRESDRIFLLGDQRAASKHKAPSRF----LFVIDKTGKRINKIE 286
12 -9.110PF02333.15; Q65NG0_BACLD/5-379; Phytase  ali follow..  11  8LAASLLSPSWSILPRAEASAYKDFSVTADAETEPVDTPDDA----ADDPAIWVHPKQPEKSRLITTNKKSGLIVYDLNGKQLAA---YPFGKLNNVDLRYNFPLDGKKIDIAGGKNTVEIYAFDGEKNKLKNIVNPQKPIQTDIEEVYGFSLYHSQKTGKFYAMVTGKAADDEYGKMYIAEEDAAIWSFSAEPNGGDKGKIVDRAGGPHLTADIEGLTIYYGEDGLIASSQGDNRYAIYDRRGKNDYVADFS---IDDGKEIDGTSDTDGIDVIGFGLGKKYPYGIF--VAQDGENT-------------ENGQPANQNFKIVSWEKIADALD... 358

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.