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Query: PF14223.6; M7ZB77_TRIUA/364-501; gag-polypeptide of LTR copia-type, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst WEELQLKAARTIRLFLSDQVIYHVMDENSPKKIWEKLESQFMSKTAMTKVYLKQKLHGMRIQEGSDLVEYMNAFNQVVTDLARLGATVDDEDMAILLLCSLPSSYDHLITTLTHGKETIKNEDITAALLSYDMRKKNALast
1 -66.000PF14223.6; M7ZB77_TRIUA/364-501; gag-polypeptide of LTR copia-type  ali  100  1WEELQLKAARTIRLFLSDQVIYHVMDENSPKKIWEKLESQFMSKTAMTKVYLKQKLHGMRIQEGSDLVEYMNAFNQVVTDLARLGATVDDEDMAILLLCSLPSSYDHLITTLTHGKETIKNEDITAALLSYDMRKKNA 138
2 -17.000PF17241.2; A7TTH5_VANPO/255-450; Family of unknown function (DUF5314 topsan)  ali follow..  72KDDLDFYLISLIINSVSKEIGKNIETGPTGLLLLRYLKCKYARKCLSSYMPIFEQVNSAV---SKPPDDRVLWAKKFIETVYNCNEDLDEDPVLAAVINHYQKMQESAAALL.......................... 193
3 -11.000PF14893.6; H2Q8T9_PANTR/1-326; PNMA  ali follow..  184WMFHDVEKRRRLLESLRGPALDVIRVLITVDECLQALEEVFGVTD--NPRELQVKYLTTYQKDEEKLSAYVLRLEPLLQKLGAIERDAVNQARLDQVIAGAVHKTIRRELNLPEDGPAPGFLQL.............. 325
4 -10.200PF03564.15; A7XDH0_DROAN/157-302; Protein of unknown function (DUF1759 topsan)  ali follow..  20  27....KIQKYHYLKSFLVDEAASLVRHLPISETAWERLNERYDRPRQIIHNLLDTELPSTNNGEVSILRSISDGANEVIRALDSIGHMDRDCWVIHLLLNKIDPE.................................. 132
5 -10.100PF03732.17; Q9ARZ4_ORYSJ/100-192; Retrotransposon gag protein  ali follow..  20  20...........................ANSIYSWEQLRDVFVLNGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQVQ----DITEASVINAASAGL..................................... 91
6 -8.390PF18162.1; M7C1J5_CHEMY/275-357; Arc C-lobe  ali follow..  11  7...................................................IKRELDL-PQKQGEPLDEFLWRKRDLYQTLYT---DAEEEEIIQYVVGTLRPKFKRFLSHPLPK----TLEQLIQRGKEVLSDFD.. 83
7 -7.560PF15739.5; G3SP07_LOXAF/229-339; Translin-associated factor X-interacting N-terminus  ali follow..  16  3..................................................KLEQELQKICVCQAPQLQVFGNVFEDICNSSFIFG-----------ILKEIKNEYELYMAILLASQPTAQYKTLLAHLKGLERS.... 79
8 -6.120PF02992.14; U5CUH5_AMBTC/113-319; Transposase family tnp2  ali follow..  13WKQFDRLHPSFVRLGLATDGFNPFGNMSNSYSLWPVICVPY---NLPPWKCMSSESLLLTLSPGKDIDVFMRPLIDELKQLWETGVETRD--------AYNGTVFSMRAAVLWTINDFPAYALMSG............ 139
9 -6.070PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D  ali follow..  10  14..............EINHSRLARLMSPDKEEGVWDRFKDCFRTHKKQEVLEV---LYTLIHGCERENQAELNVDITGMEKIHAFTQ-----------LKEYPSQQDRFVMRFDMNQTQVLFE................ 113
10 -6.010PF07526.11; M0ZWM0_SOLTU/215-354; Associated with HOX  ali follow..  16  80....................................................MTKLFSMLDEVDRRYKEYYQQMQVVVSSFEMVAGLGAAKPYTSLALKTISRQFRCLRDAIK......................... 140

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35