current user: public

If you have questions about the server, please let us know.

Query: PF14503.6; F4GIV3_SPHCD/83-314; YhfZ C-terminal domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230
# Score Template Links and tools%idFirst LSLLLDICDMNSLVGVMPLPYSKRYEGLATGISTSMNKGKMRTSLVFSRGADNRLEGILEQRYDFAVVSRLAAEHYVEKQYPIVIAHNFGPHTYVDQHALVTCRNGVNLKAQDFSNCRIGVDEASTDQRILSHRFFRDTQVTYVPIVYNQVIPALKGNDIDATIWNADALDARKNGIFSFPLEQISQDDTEAAIIHLAGKPFISRILAELLNPDEVLEYQKKVMAGACMPQYLast
1 -88.600PF14503.6; F4GIV3_SPHCD/83-314; YhfZ C-terminal domain  ali  100  1LSLLLDICDMNSLVGVMPLPYSKRYEGLATGISTSMNKGKMRTSLVFSRGADNRLEGILEQRYDFAVVSRLAAEHYVEKQYPIVIAHNFGPHTYVDQHALVTCRNGVNLKAQDFSNCRIGVDEASTDQRILSHRFFRDTQVTYVPIVYNQVIPALKGNDIDATIWNADALDARKNGIFSFPLEQISQDDTEAAIIHLAGKPFISRILAELLNPDEVLEYQKKVMAGACMPQY 232
2 -33.300PF09084.11; M7UJG4_BOTF1/16-238; NMT1/THI5 like  ali follow..  7...........................YLAQKLGYFADEGIKVALLEPNDPSDVTEIIGSGKVDMGFKAMIHTLAAKARDFPVTSIGSLLDEP---FTGVVYLKDSGITTFRSLKGKKIGYVGEFGKDELTKYYGMEPTDYEAVRCGM-NVSKAIIEGSIHAGIGLENVQMVELEEWLANQGRPRSDVQMLRIDFIAQNPEKVRKFMKAVKRATDHVLGSPSDA........ 223
3 -30.500PF13379.6; B0UDN0_METS4/41-302; NMT1-like family  ali follow..  10.............LGFIALTDAGPL--FVAKEKGFFAKHGMEVEVLKQASWGTTRDNLVLGSEGNGIDGSAGRVTQNNVPVPMHILARVAKEYLDAKVALDSKVFRVATDKKKAAGKKAAMTFPGGTHDLWIRYWLADRDIETIVVPPPQMVANMKVGTMDCFCVGEPWNAQLVQQGLGYTALTTGELWKDHPEWVQKYPNATRALLMAVIEAQQCDRPENRDEFAAIVA.. 262
4 -23.200PF12916.7; A4YDV4_METS5/1-196; Protein of unknown function (DUF3834 topsan)  ali follow..  2..........................................LKVIAAPGYPMIASTMKNKDIIIDF--------GKDGSADVILDSTVSLVR--RGLRTDYVTIKGLMVVSPDVGKRIGVWRKGSAADVLTRALLDKKGIRGEVVYAPRLVEMLNKKEVDSIVIASPFAKGKTFESVNANHEEFISAYSEGIELMKQDPQGVAEYVAKKLPIQANLQMIVNLPKT...... 192
5 -22.400PF02916.15; Q8DZD3_STRA5/72-187; DNA polymerase processivity factor  ali follow..  10......................................................ILVLASIFVATTLYGFKSTIDLTNN-------LNKTASYSEIEMSVVVPKDSKITNIEAVSKLAAPVKNDTSNITDLIEHIKSEKGISITPQKTQDAYNRIKSGDSQAMV.................................................................... 115
6 -20.600PF00497.20; A6X2Q5_OCHA4/44-271; Bacterial extracellular solute-binding proteins, family 3  ali follow..  33....................................KQLGLAAEFKDTR--TSLITGARANHFDVIASA---LYVTPERQKILNFI-----PYIKAGSSLLVLKDAKPANEKELCGKIIGSMQGASWLPKLKALSEDLGAIETREFDDAQVTQALRSGSVDVEFMDNVVAALKKFPDDYAVTSSALIYPIMVGVATTPQNKELFNAMNDAFA-----QMRKDGSYDALVKTY 225
7 -18.800PF12974.7; D0KYK9_HALNC/62-317; ABC transporter, phosphonate, periplasmic substrate-binding protein  ali follow..  11  1.............IGVLAYQGKAQTARRWDSTAAYLSEKPGYSFHIEPMFLSELAAAVRENRLDFVLTQPLQFVQLAQNDDVWPLATMVGTLNRFGSAIIVRADRSDLQHVSDLKNKIVAASKDALGAWLLGLDTLVRAGIDFTGLPMFQIVEAVWQHRADAGVIRAGFLEQLESQKGEFRVLDPSQYSDYPYLVSTELVPEWPFSATSSVDRVFAEKVARDLMG....... 231
8 -18.600PF16868.5; Q2SNF1_HAHCH/34-328; NMT1-like family  ali follow..  10  27....................................PTHKIGISAISSAGSAENIKLMRDNEAQFSILQGLFGKYAWEGSRNVRSITML----WQNVEHFVLDNEGTISDLVNAKGERLALGSKNSGTIESNRTILADKDFDLLYAGYGPSSQALQDGKVVGMGT................................................................... 170
9 -18.000PF03180.14; M9X5A7_MANHA/27-263; NLPA lipoprotein  ali follow..  14  3.............VGVISGPEHKVMEVAA---KIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGYKLVP---GNTFVYPIAAYSKKIKSLAELKD--GDTIAVPNDPTNLILLEKQDLNPRKLVIQEIEAPLLPRTL--DDVAFSIINTTYAGQNGLTPTKDGIFVEDKDSPYVNLIVAREHSEAVKDLVKAYQTEEVYNKANEEFKGAMIKGW 237
10 -16.800PF02621.14; B9M1W5_GEODF/4-263; Menaquinone biosynthesis  ali follow..  10  6..................SPCPNDTFIFHALVHGLVSKPGLIFNER-LEDVETLNRLVLEKTLDVSKISYHLLGYVRED---YCLLSAGGALGRGCGPLVVSKKYESM---DQLKGKRIALPGRYTTAALLLRLFDPAL-TDIIYLPFDRIMGAIADGSVDAGVIIHESRFTYAGDLGDWWERETGHPIPLGGIVAKRSGSEVIAGINSLLRQSVELAFAYPGKANAYIRAN 219
11 -11.800PF03480.13; Q9CLH9_PASMU/31-314; Bacterial extracellular solute-binding protein, family 7  ali follow..  12  24....................................EKTKGEIKLSLFPDSTTMISAVRGGTIDLEMSGSPNFSGLVPKLNVIDIPFIFQNREWEVGFRSFTNSKHPVKTPDDIKGLKVRTNQNP-----MYIQAFSILGANPVPMPLSELYTALETRAVDAQEHPVGIVWSAKLYEVQKHLSLTNHGYTPLIVVMNKASPALQSAILEAAKEAGAYQRKLNLDNEK..... 247
12 -11.000PF01634.18; R4XER3_TAPDE/58-228; ATP phosphoribosyltransferase  ali follow..  2..................................................AADIPRFVGEGNVDLGITGQDVLAESIAMDPHIKVDELLDLAFGKCRLQVQVPANGEYQTAESLIGKRVVTSFDFLVKDYFRKLESQQKTTEIKYVG-GSVEAACALGVADGIV----DLVESGETMRAAGLKAIETVMDTSCCLIQSASPRHPELIKTILSR................... 168
13 -10.600PF12727.7; A0LFW2_SYNFM/425-616; PBP superfamily domain  ali follow..  12  7....................................RDGRMQLSSG-NVGSLGGLMAVRRAQTHLAGSHLLDPATGGYNERYLQGVPIRLVTLAVRQQGLLVRRGNGVRGVRDLARPDVGSGTRILFDYCLRKEELAPEEIRGYDQTHMAIAVTVLSGRADAGMAIFA--AARALGLDFIPVAE------ERYDLVIPESFWEDPKMGLLME.................... 189
14 -10.600PF06646.11; P37_MYCPN/50-380; High affinity transport system protein p37  ali follow..  12  1......................SKFFELYSNNLSKKLDKKVTVSFNIIDDSFTKISNIQTAKADFAFVNSQSIKDNGIEEFNLILLYETNKLINFYRGMILITGSEEEKKWSDFMNYGIGHSSGSAGKFQLPDLLLRKPGLQNAINQNPDKFANVRGREIGRDNKIKIVFDDANNKNNKVEILTYTDPMLYDIGIVSDTSDRYQKAIAEVF..................... 292
15 -9.290PF13531.6; A9BZ83_DELAS/51-277; Bacterial extracellular solute-binding protein  ali follow..  10  1................IRVVTSGGFSAAYDQLIPLYEQAGHKVVTSRGASMGNAQDSIPSEQFDIVILADGALDNLAAQG---KVEAGSRVDLARSMIGMSVRKGTPKPDISTLDAKTIAYSASASGTYLANELF-EQMKGKATRILSERVGAVVLRGDADIGFQQVSELLPFKE-VGPLPDEVQQRVFFSAGVATGAKSPETARHLIRFLAAPAAAPIVRS.......... 224

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.