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Query: PF14580.6; H3BFR2_LATCH/1-175; Leucine-rich repeat, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVKLSAELIEQAAQYTNPVRDRELDLRGYKIPVIENLGATLDQFDTIDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRIGEGLEQALPNLRELILTSNSIQELGDLDPLASIKSLTFLSILRNPVTNKKHYRLYVIHKVPQIRVLDFQKVRLKERQEAEKMFKGKRGAQLAKDIALast
1 -75.000PF14580.6; H3BFR2_LATCH/1-175; Leucine-rich repeat  ali  100  1MVKLSAELIEQAAQYTNPVRDRELDLRGYKIPVIENLGATLDQFDTIDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRIGEGLEQALPNLRELILTSNSIQELGDLDPLASIKSLTFLSILRNPVTNKKHYRLYVIHKVPQIRVLDFQKVRLKERQEAEKMFKGKRGAQLAKDIA 175
2 -18.200PF13855.6; C3Y9A4_BRAFL/119-179; Leucine rich repeat  ali follow..  27  2..........................................RLYDLSLDSNRLTHVKQFTGLENLLSLTLSNNRIEKIEAGSFAYLDRLQHLYLENNLL........................................................................... 61
3 -13.500PF12799.7; A4HHM1_LEIBR/66-108; Leucine Rich repeats (2 copies)  ali follow..  20  1.........................................KWLKYLNLAVNNITVIDGLQGCEALERLDLTLNFIAEPTS.............................................................................................. 40
4 -9.500PF00820.19; OSPB_BORBU/36-296; Borrelia lipoprotein  ali follow..  14  185...................................................GKVKVFDTAGSNKKTGKWEDSTSLTISADSKKTKDLVFLTDGTITVQQYNTAGT-SLEGSASEIKNLSELKNAL.................................................. 260
5 -7.480PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D  ali follow..  223..............FNITTQFFKIGYWELEGEVLFDMVHPTLSYLLQAYKPSLSSDLIETNTMLFSDVLNKDYDDYQNNKREI----AILRRIYRSHNNTLFISE...................................................................... 310
6 -5.890PF07978.13; Q7VX89_BORPE/3-102; NIPSNAP  ali follow..  13  2................................................................EERDYRIKPGKAGLFVATYEAHGLALRFLGYFMSEIGELNHVVAWWAYDSLDERDAARSRMLADPQWQAYLERVTDLIDLQQTRILKPVS..................... 97
7 -5.450PF15094.6; F6ZZ04_HORSE/2-190; Domain of unknown function (DUF4556 topsan)  ali follow..  15  41.......................LSLRGELVASLQD------------------ASLMGLHVDINTVTITIPNPRQDLLQRRGMGGGDGRVFVHLPKQRWDLVKSGSHLEESLSLKFLWVHQSSIFTVTENRGSVVVDVPAADAMWSQRSEEQNGAPGMQAL............. 172
8 -5.300PF00010.26; BHA15_RAT/73-125; Helix-loop-helix DNA-binding domain  ali follow..  16  1.....................RRLESNERERQRMHKLNNAFQALREV------IPHVRADKKLSKIETLTLAKNYIKSLT............................................................................................... 53
9 -5.230PF01827.27; Q9BKX3_CAEEL/101-241; FTH domain  ali follow..  11  5......KSFLEILKLKKRVNVKKIDLKNFLFTDILSIISYMNVIEYIKMQYVQFERLTCLDQWKNAHYCIIVDSELENVPIEDFFHFKEFE-VESRSFSTQNAIEINDLLKRSSFQSCTI....................................................... 124
10 -4.840PF12498.8; B9SZ77_RICCO/317-442; Basic leucine-zipper C terminal  ali follow..  15  6.VKMAEETVKRITGLNSLFHTIP-EMSTMSMPSFDGSPSDTSTDAAVPVQDDTEHQFYQPPNNPLSTHDPRVNNALADISS-VENVQPHSGAAGLGGNKMGRTASLQRVASLEHLQ........................................................... 118

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.