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Query: PF14752.6; W5NCL1_LEPOC/34-634; Retinol binding protein receptor, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst QCDPTVDDRLYHTCIAAISIIVLLVLASFTRRKRLAQDCFKGIPGLLSPVNFLDHTRHKGLAVAVFGVLFCKLCVLVLAENPLPFTKNSTQEHREYWKIVSLFYYPALYYPLLACGTLHSQVGYVLGSLLSWTHFAILVWQKVDCPKTTEIYKYYSLLTSLPQIGCLAFLSFQYPLLLFKNSRGTGQTYASEDLYSSYYKDYVKEILKKKPSKNSSCTAEATLSARILESLRSYIYTPEEVFRFPLKLAISAVVSFISVYQVALLLVTFVVPTLQKVRAGVNEDIAFLLAGFNIHLSEDRAEVVKIVSYYMWCVEVCYLSSVTLSCLVTFTMLMRSMVLHRSNLKGLYRGDIYNVYNCQRNIRPSRMAVVCWMGFTSYQAALICLGLLIQTLVFFICIMFFVFLIVIPILYGQNLILFRILKTMWPFWLLLILVVVLQHVTAQFAFLKKDGGTRDLDNRNGLFLLTYLLFPVNVLAGVLLGIWRMVITALFNIVHLGRLDISLLNRGVEGFDPGYRCYAHYLKIEVSQSHPVMKAFCGVLLQSPAPEGSAEQKIRDAEEGIHLVQQEKKQSKLSNSRRARARWLLLFTLVNNPSLVASRKHLast
1 -161.000PF14752.6; W5NCL1_LEPOC/34-634; Retinol binding protein receptor  ali  100  1QCDPTVDDRLYHTCIAAISIIVLLVLASFTRRKRLAQDCFKGIPGLLSPVNFLDHTRHKGLAVAVFGVLFCKLCVLVLAENPLPFTKNSTQEHREYWKIVSLFYYPALYYPLLACGTLHSQVGYVLGSLLSWTHFAILVWQKVDCPKTTEIYKYYSLLTSLPQIGCLAFLSFQYPLLLFKNSRGTGQTYASEDLYSSYYKDYVKEILKKKPSKNSSCTAEATLSARILESLRSYIYTPEEVFRFPLKLAISAVVSFISVYQVALLLVTFVVPTLQKVRAGVNEDIAFLLAGFNIHLSEDRAEVVKIVSYYMWCVEVCYLSSVTLSCLVTFTMLMRSMVLHRSNLKGLYRGDIYNVYNCQRNIRPSRMAVVCWMGFTSYQAALICLGLLIQTLVFFICIMFFVFLIVIPILYGQNLILFRILKTMWPFWLLLILVVVLQHVTAQFAFLKKDGGTRDLDNRNGLFLLTYLLFPVNVLAGVLLGIWRMVITALFNIVHLGRLDISLLNRGVEGFDPGYRCYAHYLKIEVSQSHPVMKAFCGVLLQSPAPEGSAEQKIRDAEEGIHLVQQEKKQSKLSNSRRARARWLLLFTLVNNPSLVASRKH 601
2 -6.810PF16084.5; Q37877_BPP1/1-147; LydA-holin antagonist  ali follow..  14  1.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MIGWGVCVLALALADRYLLKRKDITHLELGDVEIKPGFIRVPFKYRSKFPFLRGATVRY---IRDVQKPTTVIEGEQRCLASAEQGENSEWLYIPTEYMGKGERLWHFNVMVTHNP........ 119
3 -6.650PF15320.6; W5J3L4_ANODA/21-105; mRNA cap methylation, RNMT-activating mini protein  ali follow..  8  3....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EHEYANRFTDLDEEFMEYCK----RASHPPPIVYPWNPGFRRGGGGGPWRGHRNDRRFHDNRGRGGHYSQGQRYDGSRQRSY................... 80
4 -6.330PF09781.9; W5KXC0_ASTMX/3-188; NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit  ali follow..  11  46...............................................................................................................................................................................................................................................................................................................................................................................................................................................................SHGKRMFVIKPTDFYDRRFLHLMKYYILLTGI-----VAAFVTFVNIFIGEAELAETPEGYE---PEHWEY---------YKHPITRWISHYMYDSPVKDYEKMMALIHVEAEKVEMRKLKLEVRRHMREKGDGPWF-HLETIDKSLIDQGHKA 182
5 -6.330PF09405.10; Q4WWH0_ASPFU/141-271; CASC3/Barentsz eIF4AIII binding  ali follow..  8  28................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KRREHERYAKERDE-NPAFVPTRGRFFL---HDK-----------RSTEPGPNGHRPFSKSKSRPYGLIVDGNVRRHSKPDASEGQW-LHETVAGDEPTNKPSAV 119
6 -6.200PF10252.9; B2AKR9_PODAN/94-186; Casein kinase substrate phosphoprotein PP28  ali follow..  13  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NPNHSRAARNQTKVPKKSADDDEELAAGTKKLAVSAPNKKEREAIAAQEAKERYMKLHELARLREIRAKREE 82
7 -6.190PF14851.6; I3K7X2_ORENI/8-165; FAM176 family  ali follow..  13  4...................................................................................................................................................................................................................................................................................................................................................................................................................................................LLSNSMATYAHIKANPESFAL------------YFMMGVCFGLFMALCLLVAGITCRARRHRKPPPSPSRRQLKESSEE----------EEEEEESVGEERAVDTEIPKVTVGPLSDRSSQSNATLRSLNVFTSAEELEKARRLEERERIVREIWRNGQP...... 144
8 -6.150PF15606.6; RHSA_ECOLI/1298-1372; Bacterial toxin 34  ali follow..  14  5..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LDITMIASRGNVADTGITDRVNDIINDRFWSDGKKPDRCDVLQELIDCGDISAKDAKSTQKA......................................... 66
9 -6.130PF10452.9; Q6CMN6_KLULA/32-666; TORC1 subunit TCO89  ali follow..  16  503.....................................................................................................................................................................................................................................................................................................................................................................................................................................................DSRTQQKLWLQRENSIQDLSSQNTSPDAVF------------------------------LASNVEVRREFERISREYTNV-------RRFSNPLADSLSRISQQQSIEIQKQKKISTGENAGSFFGVDYDKANKLEMQRMLTKLW-LEFNKDENP........ 634
10 -6.090PF11788.8; Q7S1Z3_NEUCR/86-222; 39S mitochondrial ribosomal protein L46  ali follow..  12  3.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IKSGVILTR--PPLLTRDLTPFEESFYFYQKRLNERLTAPFRKDFYFKKDTAADLDWRIKLKERHGVPAKDIGRYNPRGRMAWNDEVLVGSQT................... 93
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.