current user: public

If you have questions about the server, please let us know.

Query: PF14816.6; F7I216_CALJA/2-354; Family of unknown function, FAM178, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350
# Score Template Links and tools%idFirst FSSGGSGSYFNNLDYLLLEKREQALEQKQERLLLQECLHLNSLDTDEDEMPLTPEHRLRQEDRLSSRVLDQPGQHGETPSLPKQNAKILVRCATILPPHSSLASMFLISSPAQQLSFLRSGLLSTLYLHMPDCPVPLLQWLFQLLTWPPETSLGAFGLLWDLSVDELFLQSDEDMHLWCPSLQEIREAFHSLGAYSPALYPLGPFWHSGRMLPGEAGLSENKHQDAPQEVTLDISLSHIYKFLSLCAQAQPGAYTDENLMDLIELLCRTGLDVGLCLLPKTDLQQLLFLLLENIQEWPGKLQELCCVLSWVSDHHHNLLALVQFFPDVTSRSRCLRSQLSLVVIARMLGQQETLast
1 -111.000PF14816.6; F7I216_CALJA/2-354; Family of unknown function, FAM178  ali  100  1FSSGGSGSYFNNLDYLLLEKREQALEQKQERLLLQECLHLNSLDTDEDEMPLTPEHRLRQEDRLSSRVLDQPGQHGETPSLPKQNAKILVRCATILPPHSSLASMFLISSPAQQLSFLRSGLLSTLYLHMPDCPVPLLQWLFQLLTWPPETSLGAFGLLWDLSVDELFLQSDEDMHLWCPSLQEIREAFHSLGAYSPALYPLGPFWHSGRMLPGEAGLSENKHQDAPQEVTLDISLSHIYKFLSLCAQAQPGAYTDENLMDLIELLCRTGLDVGLCLLPKTDLQQLLFLLLENIQEWPGKLQELCCVLSWVSDHHHNLLALVQFFPDVTSRSRCLRSQLSLVVIARMLGQQET 353
2 -8.600PF08568.10; Q6CFU3_YARLI/1-673; Uncharacterised protein family, YAP/Alf4/glomulin  ali follow..  2..............QLTDDHKKD--LEKLGEELKGKEEHTVAGEDEEDVNHGADDSEDAEDEDAEDENDYTELDVDIVCQFIKDAAREAEKTGDYISYATVIDIHC-RYKHVDRVKILTS--LLEVLRTNPKICEEI--WLPALLL---------------FNVEDFDFNDGLEGHPTFYPLIMLFSTLAEYGNPKELFLKTVETLSTLTCDRAPENDKLKFKQAESLRKFEVCKFHVLEELMSSCMKKIKTQYPSRFLASAASAILMF-----------------SARNAALFRHFPLIVGILARRVYVFIRDWG------DEPMDMSPDEQAKSAKILQSLSTYFFY.... 302
3 -6.990PF08576.10; B3L4Z5_PLAKH/67-165; Eukaryotic protein of unknown function (DUF1764 topsan)  ali follow..  1..RKEQLEAKANIEDIFSNLKGKEKKATKVGNETRPIKKNSEKSGLHGGPVHKKAKRLVAKGPITERARTSD......................................................................................................................................................................................................................................................................................... 70
4 -6.230PF07281.12; A2QI27_ASPNC/123-339; Insulin-induced protein (INSIG)  ali follow..  12..........................................................................................................................................................VYGVITIHLHENHWITPVKLENTHYYGSWQYLAFWGVAGAVLGNILPWFDQFSDEIIGSPKQAKGSSDPETADRTLSWVSVVRSVGAFVGIAFAMRRLPWESTTQASLTLALVNPVLDRTRTGFVLSTVVGLAGMGIIAFAASKFDVTGWGYGLAVEMSQESIAVRVASVLFCACVCFGNIGRQLA............. 217
5 -6.120PF12755.7; C4QYN7_KOMPG/59-156; Vacuolar 14 Fab1-binding region  ali follow..  10  7...............................................................................................................................................................................................................................................LIGLAATAIALGQHEVPKYLEKIIHPVLACFGDQDAKGEILLYFNEIFDNLCKLTADSEVSVKKGADLLDRLIKD....................................... 98
6 -5.600PF03685.13; A0B954_METTP/2-82; Uncharacterised protein family (UPF0147 topsan)  ali follow..  14  1..............................................................................................................................................................................................................................................................SEKVIKQCVEILERIMSDDTVPRNIRRSAENVKGILLQEGLAEAVKAASAISILDEISNDPNIPLHTRTLI............................ 71
7 -5.500PF11864.8; K1XYE9_MARBU/105-586; Domain of unknown function (DUF3384 topsan)  ali follow..  49............................................................................................................................................LLTAYVRQSTSTDPERLAFFHVLTAPANPEDFQFQLTALVELAKHGKDLSGFHYETLPLLTSWLRHNFAITSAARRNAGRNRSSKSKTPLSEETNLSLLFAFIVDVIKFSFSVSSEETTGGLIDVVLYICVNTPLSSDLKTCIDKVLCSIHCLVSDVQSEAWRSISNLCRSHNAQKTVRILLNILQEPPADSASGRQTVALSVLEKLF..... 281
8 -5.490PF04815.15; C5DPW1_ZYGRC/646-748; Sec23/Sec24 helical domain  ali follow..  1.................................................................................................................................................................................................................................................................NQNVAQRIMIKDVVQHLGDCDFPAIRKTIDDKMVEILTQYKALVGGSLTSQLVLPEA----LKTLPSYMLAFEKSELML................. 75
9 -5.390PF07560.11; Q255Q6_CHLFF/150-273; Domain of Unknown Function (DUF1539 topsan)  ali follow..  39..........................................................................................................................................................................................................................................GWQIIIHYLTVELKEDTSHPDAQTFPIMMHHLILALEDPKISQEKKRDALREISSYADK-PTWAESIFRNINNLYNTRSSGRDQI.................................. 124
10 -5.390PF04391.12; C7LPH8_DESBD/40-223; Protein of unknown function (DUF533 topsan)  ali follow..  11  37...............................................................................................................................................................................................LGLVAYKAFNTWQQNNSSAVQIPQPRTVDRIPAAEAEFHG-----KAVLRAIIAAAKA-DGHIDDRERQLIDQSIAQLTDDRELQFWVDQELRK-PAEIATSATTPEIAAEMYLASLLMVDEENFMERAYLD----------ELARQLKF............ 172

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 7 7 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.