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Query: PF14893.6; H2Q8T9_PANTR/1-326; PNMA, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLRLLEDWCRGMDMNPRKALLIAGISQSCSVAEIEEALQAGLAPLGEYRLLGRMFRRDENRKVALVGLTAETSHALVPKEIPGKGGIWRVIFKPPDPDNTFLSRLNEFLAGEGMTVGELTRALGHENGSLDPEQGMVPEMWAPMLAQALEALQPALQCLKYKKLRVFSGRESPEPGEEEFGRWMFHTTQMIKAWQVPDVEKRRRLLESLRGPALDVIRVLKINNPLITVDECLQALEEVFGVTDNPRELQVKYLTTYQKDEEKLSAYVLRLEPLLQKLVQRGAIERDAVNQARLDQVIAGAVHKTIRRELNLPEDGPAPGFLQLLLast
1 -99.700PF14893.6; H2Q8T9_PANTR/1-326; PNMA  ali  100  1MTLRLLEDWCRGMDMNPRKALLIAGISQSCSVAEIEEALQAGLAPLGEYRLLGRMFRRDENRKVALVGLTAETSHALVPKEIPGKGGIWRVIFKPPDPDNTFLSRLNEFLAGEGMTVGELTRALGHENGSLDPEQGMVPEMWAPMLAQALEALQPALQCLKYKKLRVFSGRESPEPGEEEFGRWMFHTTQMIKAWQVPDVEKRRRLLESLRGPALDVIRVLKINNPLITVDECLQALEEVFGVTDNPRELQVKYLTTYQKDEEKLSAYVLRLEPLLQKLVQRGAIERDAVNQARLDQVIAGAVHKTIRRELNLPEDGPAPGFLQLL 326
2 -13.600PF03732.17; Q9ARZ4_ORYSJ/100-192; Retrotransposon gag protein  ali follow..  17  1...........................................................................................................................................................................................................KVIHLTLDGIARSWYFNLPANS--YSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQARCQV-------QDITEASVINAASAGLLE...................... 93
3 -12.000PF03564.15; A7XDH0_DROAN/157-302; Protein of unknown function (DUF1759 topsan)  ali follow..  11  1.......................................................................................................................................................................FGGI-------KEWPAFKALYISTVHSKHLGKIQKYHYLKSFLVDEAASLVRHLPISETA--YDNAWERLNERYDRPRQIIHNLLDFMELPSTNNGEVSILRSISDGANEVIRALDSIGHMDRDCWVIHLLLNKIDPESRRK................. 136
4 -11.000PF14223.6; M7ZB77_TRIUA/364-501; gag-polypeptide of LTR copia-type  ali follow..  9  1.......................................................................................................................................................................................WEEL-----------QLKAARTIRLFLSDQVIYHVMD------ENSPKKIWEKLESQFMSKTTKVYLKQKLHGMRIQEGSDLVEYMNAFNQVVTDL---ARLGATVDDEDMAILLLCSLPSSYDHLITTLTHGKETIKNEDI. 124
5 -10.600PF16297.5; F7ASC6_CALJA/2-113; Domain of unknown function (DUF4939 topsan)  ali follow..  13  5............................................................................................................................................QLMKALLAWPLLPARRRWRNPIPFPETFDG------DTDRLPEFIVQMGSYMFMDE-NDALKVTFLITRLTGPTLQWMIPYIKKQSPNDYWGFLAEMKRVFGCQEDKD.............................................................................. 111
6 -10.300PF02093.16; M3XFF7_FELCA/209-416; Gag P30 core shell protein  ali follow..  12  6................................................................................................................................................................SASDLYNWKLHNPPFSQDP--VALTNLIESILVTHQPTWDDCQQLLQTLLTAEERQKVLDFATPAGREHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDP-EDPGQAASVILSFIYQSSPD-IRNKLQRLEGLQGFTLSDLL 199
7 -9.940PF00607.20; GAK10_HUMAN/312-526; gag gene protein p24 (core nucleocapsid protein)  ali follow..  8  57.....................................................................................................................................................................................TWWIDGVQEQVRRNRAANPPVNIDADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQK-----SIADEKAGKVIVELMAYENANPECQSAIKPLKGKVPDVISEYV 199
8 -9.880PF17241.2; A7TTH5_VANPO/255-450; Family of unknown function (DUF5314 topsan)  ali follow..  8  22...............................................................................................................................................................................SDTQNYDIWFHYFIRVVGRTS--DFYLISLIINSVSKEIGKNIETSFFTTKGPTGLLLLRYLKCKYARK-CLSSYMPIFEQVNSAVSKPPDDRVLWAKKFIETVY-----------NCNEDLDLKNVVEDPVLAAVINHYQKMQESAAALL 193
9 -7.840PF11815.8; F8PP50_SERL3/55-197; Domain of unknown function (DUF3336 topsan)  ali follow..  10  16...............................................................................................................................................................................RAAHTYEEWKETLDEYLSFNEWKNVDDDPYYDWKLVRKVSQSLKILRQKDDARGVLGVLETIRTNFAAVESSRYCHRILYITFLGTKDLIEAYYDEQEKALEYVRNSQELSNEEKKRFFKT.............................. 140
10 -7.670PF18162.1; M7C1J5_CHEMY/275-357; Arc C-lobe  ali follow..  26  12...............................................................................................................................................................................................................................................................DLPQKQGEPLDEFLWRKRDLYQTL------YTDAEEEEIIQYVVGTLRPK-FKRFLS---HPLPKTLEQLI 72
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.