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Query: PF14949.6; H3IMN4_STRPU/15-120; ARF7 effector protein C-terminus, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst SKILQSLMFKNPGKKVAEFANFKPEESEREKRKLRRLQEEEHQRHLQNRTMYDANGHLSSTGQDLCDCLGKDCPGCHYPCKDCGSIKCGPVCRCKRKWVFDLIEDELast
1 -63.100PF14949.6; H3IMN4_STRPU/15-120; ARF7 effector protein C-terminus  ali  100  1SKILQSLMFKNPGKKVAEFANFKPEESEREKRKLRRLQEEEHQRHLQNRTMYDANGHLSSTGQDLCDCLGKDCPGCHYPCKDCGSIKCGPVCRCKRKWVFDLIEDE 106
2 -9.210PF05039.12; C0A1C9_CHICK/49-156; Agouti protein  ali follow..  22  36............................VQEGDGNLLQKSSVLEPQALSTALQAAGREERSSPRRCVRLLESCLGCCDPCATCYCRFFNAFCYCRK.......... 107
3 -8.630PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)  ali follow..  37  130...................................................................CERALCGQCVRTCWGCGSVACT-LC.............. 153
4 -7.360PF09369.10; K0TM93_THAOC/1118-1201; Domain of unknown function (DUF1998 topsan)  ali follow..  22  45...............................................TRQLYSHIIPLFENALELCASCSYKAVGYDGGCPAC....................... 83
5 -6.960PF14976.6; G1MWK5_MELGA/5-149; FAM72 protein  ali follow..  30  61.................................................................CKCKLKNCLKC-SPCKPCLLS-----CNNGHFWMFYSQAV. 105
6 -6.930PF09347.10; Q13MV8_PARXL/18-188; Domain of unknown function (DUF1989 topsan)  ali follow..  8  16....QVFRILDLGNQAVDTLFYNSADPLERYSAQDTIRAQRNLYLSAGSVLMSNLGKIVADTCGRHDTLGGACAAESNTVRYALDKRYMHNCRDSFLHAITHCTCG 122
7 -6.730PF16451.5; Q98341_9BETC/16-290; Spike glycoprotein N-terminal domain  ali follow..  13  69TNTLSLNWYKPP---SEFNDGIFAKVKNLKASLPKDSTSYFPTIVIGSNFVTTSYTVVLEPYNGIIMASICQYTICLLPYTDCKPNTGGPVCILKRNFTFN..... 181
8 -6.340PF07773.11; H0UVK5_CAVPO/77-390; Protein of unknown function (DUF1619 topsan)  ali follow..  34  1.................................................................CVC-DLSPAQCDVNC--C----CDPDCSSEDFSVFS..... 29
9 -6.270PF04121.13; K1WK05_MARBU/214-981; Nuclear pore protein 84 / 107  ali follow..  12  108.KSKRMNPLLNRNVPEDLITQLDPDAMTRQGKCLQKQDEYFERAIWLGCYELLRRGKSADEIREWCV....................................... 173
10 -6.270PF02433.15; E8RUA2_ASTEC/5-232; Cytochrome C oxidase, mono-heme subunit/FixO  ali follow..  13  6RNSMLLLIFTVIAVSIGGIIEILPLFRMQTTIEPVKGVRPYTPLELMGQEIYIREG----------------CNTCH------GSKRTGPDLKYSDEWHVAHLK.. 123
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.