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Query: PF14979.6; TMM52_MOUSE/30-178; Transmembrane 52, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst RNCDPSDQCPPQARWSSLWHVGLILLAILLMLLCGVTASCVRFCCLRKQTHTQSHTPAAWQPCDGTVIPVDSDSPAHSTVTSYSSVQYPLGMRLPLYFGEPDPDSMVPPTYSLYASELPPSYDEVVKMIKAREEVAAPSEKTNSLPEALLast
1 -114.000PF14979.6; TMM52_MOUSE/30-178; Transmembrane 52  ali  100  1RNCDPSDQCPPQARWSSLWHVGLILLAILLMLLCGVTASCVRFCCLRKQTHTQSHTPAAWQPCDGTVIPVDSDSPAHSTVTSYSSVQYPLGMRLPLYFGEPDPDSMVPPTYSLYASELPPSYDEVVKMIKAREEVAAPSEKTNSLPEAL 149
2 -13.600PF11669.8; H9G3Z2_ANOCA/43-144; WW domain-binding protein 1  ali follow..  20  9..CGETGCC---IYYYELWWFWLL--TVLFLFGC---------CCAYRHRRAKLRLQQQQRQREINLIAYHG---ACNYPPSMVDLRMLASFKLPAYEEVAHRPTTPPPPYS..................................... 102
3 -13.300PF15843.5; CC080_HUMAN/46-247; Domain of unknown function (DUF4719 topsan)  ali follow..  16  1..CGERERCCDATNATAVWFVRKLSGLLILLVLFAIGYFLQRIICPSPRRYPRGQARPGQRP---EAAAGSQDSLLDS--GGGGRGRGGGGRSDPSCASEHEMRVVSPVFLQLPSYE--PTYEESMRLQQ................... 168
4 -13.100PF15957.5; B4QL66_DROSI/113-224; Commissureless  ali follow..  16  7...............NEVW----IGIVFTLILISMVFCICSCFLYHQFRTWKRNYRNNANGSTQCTIVDIEALKLHPDVEDPV-------------------------PEYTLVS----PSYEAALELLQKSPQSSCLIVYPSVF.... 105
5 -12.600PF15664.5; E2RC46_CANLF/29-168; Transmembrane protein 252 family  ali follow..  19  17......................MLLPLGFVILLSGIFWSTYRQASKSKGVFTHVLRRHLSHG-ALPLATVDRPD------PAYEESLDAEKQPCPT---EGEVSDIPPPLYTEPGLEFPPSYEESVAGGVPAATPLQDAERQS...... 140
6 -8.140PF15029.6; H0VXD9_CAVPO/9-242; Transmembrane protein 174  ali follow..  16  61.............EWTQLLGPILLSVTFILIAVCKFKMLSCQLCKESEERVPDSEQTSGGQSFVFTGIN--HGATVVQYIPPPYGSQEPMAMNTAYLQSMVNPCGLLPSGGAAGAMPSPPQYCTICPQDNAAFV............... 186
7 -7.670PF01509.18; A7BQM4_9GAMM/32-180; TruB family pseudouridylate synthase (N terminal domain)  ali follow..  12  7...............RKAGHTGSL-------IASGLLPICL------------------GEATKFSGFLLEADKHYQAEFTSTGDAEGDIVQTRPLSNIDRNKIDEVIQAFIGPIQQVPPMHSAIKYQGQALYKLARQGKTVERQPRTV 122
8 -7.400PF13908.6; I3IYU5_ORENI/55-228; Wnt and FGF inhibitory regulator  ali follow..  25  1......DKCRGYYDVMGQWDPPFVCRTGSYLYCCG---TCFRFCCAFKSSRLDQTT............................................................................................. 48
9 -7.370PF15345.6; M4AQD5_XIPMA/9-221; Transmembrane protein 51  ali follow..  14  13....................VGLVALGV-VMIVWSLVPANTGFNNSSSGSGGDDGIDGKRNKASSVAFVLAGSGVAMLLLSLCLGLRNKQREQLRRQEIQNQRDAAREQEERETAEERVPSYEEVVGSGQYPVRQSNLRPSVSQLPS.. 143
10 -7.050PF15763.5; J9NSA7_CANLF/7-170; Regulator of human erythroid cell expansion (RHEX)  ali follow..  16  1................KVWHGLVIAVVSFILQACLFTA--INYLLCRNAHRQPLAAQEETRSTPVSEPHYRHGSDTSSD-SSNSSDNSDSSPQNCQATKDVNYTQVVFSTPGGLKNESALDYEN-LKETTDYVNVYPKSHKPN...... 144
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;