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Query: PF15010.6; M4A0Y5_XIPMA/1-307; Putative cell signalling, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWCKPIDTPAALESDFNSYSDLTEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGDESNDDSYDEDFLPASEPTTQSTELSSYPPYLKDLIHSQLCQHLGMQRPCSESRGGISEGGGSREPSSTAGSPDTLCSSLCSLDEQHPLLRDLRTHRGNHAQNNAAELAAKILSALHGGEELLARLQRVGHSGPGQDSPCYSMSYSETYLSPGEDDDTPCKDYEGTVCQKEVDGQGVDYPPDYNPHRRVSDVASSGVVSLDELast
1 -114.000PF15010.6; M4A0Y5_XIPMA/1-307; Putative cell signalling  ali  100  1MLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWCKPIDTPAALESDFNSYSDLTEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGDESNDDSYDEDFLPASEPTTQSTELSSYPPYLKDLIHSQLCQHLGMQRPCSESRGGISEGGGSREPSSTAGSPDTLCSSLCSLDEQHPLLRDLRTHRGNHAQNNAAELAAKILSALHGGEELLARLQRVGHSGPGQDSPCYSMSYSETYLSPGEDDDTPCKDYEGTVCQKEVDGQGVDYPPDYNPHRRVSDVASSGVVSLDE 307
2 -6.610PF05316.12; Q5K457_LACTC/27-373; Mitochondrial ribosomal protein (VAR1)  ali follow..  8  254....NSLNINNIPMNILMFKYLTGWSITLNGRLAS--SKAISRTNTYRVLVG---------TFRNKKYLWGHINNNYKLNYIPANH--NISNLSNVIKVKLN............................................................................................................................................................................................................. 345
3 -6.450PF11016.8; K9YFR0_HALP7/21-166; Protein of unknown function (DUF2854 topsan)  ali follow..  17  36LKPTPYTKETPPEVVKLREEQATPTQDQIRKDVTR---YRYGQQVHLEE----SLERLGLSPTDEERPILSGLREEAIDGAYA--LILEFESSLVAWETWQD............................................................................................................................................................................................................. 128
4 -6.390PF11992.8; Q1LH80_CUPMC/17-345; Domain of unknown function (DUF3488 topsan)  ali follow..  13  172LFP--RLDHPLWRLPQSEPIGRTGISDTMKGKLIRSPDVA--RVPASLYWRAWRPARSRSVRPADGLRDDIGDSDFAGSAA--PGAHEYNITLEPTQASW-VLDRGQAISSSLNAQVSTDNEFFANLPVDRPLRYRARSV....................................................................................................................................................................... 329
5 -6.060PF05857.11; Q326X1_SHIDS/32-247; TraX protein  ali follow..  12  1.........QRDIIKTVA------LVLMVLDHIKQEWMFLAGRGAFPL--LNLSRHAHIRQPAINRLWGWGIIAQ-AGFPWYEGNILFAFAVAAQVLTWCETRS........................................................................................................................................................................................................... 103
6 -5.990PF14655.6; A0A0I9N9T0_BRUMA/96-507; Rab3 GTPase-activating protein regulatory subunit N-terminus  ali follow..  20  300.IVDGKREGE-----RIYMAPGKYKLAAVTDSL--------ARVA-LIDWKGYRDARCAWLEGMSTLDRKKSRYELEVQPSTTLFLV--FAPRRGLLEAWSMQNGRRVFASTVDRH............................................................................................................................................................................................... 408
7 -5.950PF01680.17; E3GR74_EUBLK/3-208; SOR/SNZ family  ali follow..  19  36VMALERVPSDIRKEGGVARMSDPKMIKEIQAAVTIPV-MAKVRIGHIAEAQGIDYIDESEVLTPADESFHRNLGEALRRIGEGASMVRHMRTIQADMRQVAGMRREEL....................................................................................................................................................................................................... 176
8 -5.770PF00385.24; HP1_DROME/24-73; Chromo (CHRromatin Organisation MOdifier) domain  ali follow..  20  3........................VEKIIDRRVRK------GKVEYYLKWKGYPETENTWE--PENNLDCQDLIQQYEAS................................................................................................................................................................................................................................... 50
9 -5.740PF18686.1; D3HPT4_LEGLN/32-224; Family of unknown function (DUF5636 topsan)  ali follow..  11  75.............DKGLSKEDFMFLTASLKDSSL--RGKPHGEFTHALQW----------LKQQEDPSFLDNMEIKDICENIFKLLGHENSTTTHPFNCWDQLDRAGADDARSPE................................................................................................................................................................................................ 172
10 -5.680PF01560.17; POLG_HCVTW/386-729; Hepatitis C virus non-structural protein E2/NS1  ali follow..  18  1IVSGGTVARTTHSLASLFTQ---GASQKIQ-HINR-TAL-TGFLASLFYAHRFNA---------------SGCPERMASCR-----IDKFDQGWGPITYTEADIQDQRP...................................................................................................................................................................................................... 99
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;