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Query: PF15029.6; H0VXD9_CAVPO/9-242; Transmembrane protein 174, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DDFSLNVFSLTPYTPSTADIQVSDDDKAGATLLFSGIFLGLVGITFTVMGWIKYQSVSHFEWTQLLGPILLSVGVTFILIAVCKFKMLSCQLCKESEERVPDSEQTSGGQSFVFTGINQPITFHGATVVQYIPPPYGSQEPMAMNTAYLQSMVNPCGLLPSGGAAGAMPSPPQYCTICPQDNAAFVESEDYSSITDGRNSRSSLGADRLGEMQLEEEDYARFSSPPPYEEIYALLast
1 -125.000PF15029.6; H0VXD9_CAVPO/9-242; Transmembrane protein 174  ali  100  1DDFSLNVFSLTPYTPSTADIQVSDDDKAGATLLFSGIFLGLVGITFTVMGWIKYQSVSHFEWTQLLGPILLSVGVTFILIAVCKFKMLSCQLCKESEERVPDSEQTSGGQSFVFTGINQPITFHGATVVQYIPPPYGSQEPMAMNTAYLQSMVNPCGLLPSGGAAGAMPSPPQYCTICPQDNAAFVESEDYSSITDGRNSRSSLGADRLGEMQLEEEDYARFSSPPPYEEIYAL 234
2 -16.300PF15471.6; F1S380_PIG/2-320; Transmembrane protein family 171  ali follow..  20  114...........................FGFLFLTSGMLISVLGIWVPGCGWAQEPLNETFLSLQILGPLIVLVGLCFFVVAHVKKRN---NLNGGQDASESEERQPQHMEPVQVTVGDAVIIFPPP------PPPY-----------FPETSAAAASQGPGADDLLPNESPPSYYSIF---HYGTPPPEGQGVTSERDCDSIYTISGTAPTSETSHTPSLSSELPPRYEE.... 306
3 -9.920PF10177.9; W5KY66_ASTMX/13-159; Uncharacterised conserved protein (DUF2371 topsan)  ali follow..  17  21.............KKRKNDIVVVKGKSVSGMAAAFGVLVLMVGIAMAVLGYWPRENLAYSDNLKVFGPLVMGIGI-FLFICANAV------LHENRDKKT...................................................................................................................................... 141
4 -9.880PF15345.6; M4AQD5_XIPMA/9-221; Transmembrane protein 51  ali follow..  11  12............................GVGLVALGVVMIVWSLVPANTGFNNSSSGSGGD-ASSVAFVLAGSGVAMLLLSLC---------LGLRNKQREQLRRQEIQNQRDAAREQEERETAEERAQRYAVPSYE------------EVVGSGQYPVRQSNLRPSVSQLPSYDDLVQVDGIHSPSATISTSSHRPGKNNRNFLPIKIRRIKSEKLPMKNLTPPPQYE..... 213
5 -9.750PF15664.5; E2RC46_CANLF/29-168; Transmembrane protein 252 family  ali follow..  19  11..............................................................NLILAYMLLPLGFVILLSGI--FWSTYRQASKSKGVFTHVLRRHLSHGALPLATVDRP---------DFYPPAY-------------EESLDAEKQPCPTEGEVSDIPPPLY---------------------------------TEPGLEFEDAADAHPEAPPSYEES... 122
6 -9.070PF14927.6; C3ZI62_BRAFL/87-231; Neurensin  ali follow..  19  59...........................CGFSLIAFGAVALMAGYLVPVVDSAATDLNYKLDACKLAGLILLCVGGLTVAFSL----LVPSFLHGYMEKELLMQES................................................................................................................................. 145
7 -9.070PF00822.20; EMP2_MOUSE/1-165; PMP-22/EMP/MP20/Claudin family  ali follow..  13  67..........................QAVQATMILSTILSCISFLIFLLQLFRLKQGERF----VLTSIIQLMSCLCVMIGASIYTDRRQDLHQQNRKLYYLLQEGSYGYSFILAWVAFAFTFISGLM.......................................................................................................... 164
8 -8.380PF15099.6; H9H1Z7_MELGA/1-128; Phosphoinositide-interacting protein family  ali follow..  16  15.ELLTSNTASTLCISSRSESVWTNTSRSKWDIYHKPIIVMSVGAAVTVITTLSCFEIKNNEVYKMCGPAFLSMG---LMLLVC--GLVWIPIIRKKQKQRQKSQFLQSLRSFFFN....................................................................................................................... 127
9 -8.290PF02656.15; Q0AEN5_NITEC/8-85; Domain of unknown function (DUF202 topsan)  ali follow..  11  6........................AERTLLAWNRTSLSLIAFGFVVERAGKLTLAISPG-TGMLWLGLAFIVLGAITSAHAARQY..................................................................................................................................................... 72
10 -8.140PF14979.6; TMM52_MOUSE/30-178; Transmembrane 52  ali follow..  16  14............................................................RWSSLWHVGLILL--AILLMLLCGVTASCVRFCCLRKQTHTQSHTPAAWQPCDGTVIP-----SDSPAHSTVTSYSSVQYPLGMRLPLYFGEPDPDSMVPPTYSLYASELPPSYDEVVKMIKAREE................................................ 134

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24