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Query: PF15333.6; F6RBU1_HORSE/6-220; TATA box-binding protein-associated factor 1D, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SGSSLFKTQCVPYSPKRRQRNSIRKFVHSPESVQARDSSSDSSFEPRPLTLKAIFERFKKKKRKKRKYKPTGRPRGRPKGRRSTRCSQITKKHIRDRGPGFPFLESKNGRRPLPWRKILTFEQAVARGFFNYLEKLKYEYHLKESLKQMNVGEDLEKDDLDSRRYKYLDDDGSLSPIEELAAEDEVAANLEHDDECDIKLVEDSCFIISSELPKKLast
1 -119.000PF15333.6; F6RBU1_HORSE/6-220; TATA box-binding protein-associated factor 1D  ali  100  1SGSSLFKTQCVPYSPKRRQRNSIRKFVHSPESVQARDSSSDSSFEPRPLTLKAIFERFKKKKRKKRKYKPTGRPRGRPKGRRSTRCSQITKKHIRDRGPGFPFLESKNGRRPLPWRKILTFEQAVARGFFNYLEKLKYEYHLKESLKQMNVGEDLEKDDLDSRRYKYLDDDGSLSPIEELAAEDEVAANLEHDDECDIKLVEDSCFIISSELPKK 215
2 -6.560PF06524.12; B7QNY2_IXOSC/1-301; NOA36 protein  ali follow..  24  252.........................................................................................................................................YDYGGAGYYGSGGGGGDLDDE--------DEDDDE-----DDDDDDDDEDEESDEDESSDEK................ 300
3 -6.530PF10608.9; W5LZY1_LEPOC/106-223; Polyubiquitination (PEST) N-terminal domain of MAGUK  ali follow..  37  1..................................................................................................................................................................EKYRYQDEDTP--PQEHS................................... 16
4 -6.390PF12189.8; VIRE1_AGRFC/1-63; Single-strand DNA-binding protein  ali follow..  14  10........................................................................................................................................................................KNMPVLAVEKPQEIHKEELSDHHQSNSLDLEMIELENFVLHCPLPEE 59
5 -6.170PF09500.10; Q5QV31_IDILO/157-297; Putative thioesterase (yiiD_Cterm)  ali follow..  9  19.................................................................................................GIKIHQYTGRVFETRAVLSRNINVHGTMFAGSIYSLGTLTCWGLLHLQLLERELEGAVVLGDGNIH---YHKPTQEPRAIARLSDVTGDFSALKQGKN-KAQILDEEQPVAEFT.... 134
6 -5.700PF11934.8; E7FDM3_DANRE/70-205; Domain of unknown function (DUF3452 topsan)  ali follow..  13  1........................................................................................................KGTAEGNYVSLTRILRSSQQSLIEFFSKMKKWQDMANLPRDFQQSTEKLERNFTVTSVIFKKYLPLFRDIFKTPTDELPRTHRGRKQRRHPCTVTEVFNFCWILFIHAKGN 111
7 -5.630PF14256.6; Q5WK43_BACSK/8-134; YwiC-like protein  ali follow..  5  11..................................................................................................ISVPYIAAQPVLLHLPLFLAWLLLYLASYPLLQALRRGSKKRSWLKWGFGYAASAAAFLIPVVLLEPLLLGFAPVLLAFIMVHIWHVRRKAERALFNDICAILLFCTGGAAA..... 126
8 -5.590PF13980.6; E0SE34_DICD3/1-61; Uncharacterised protein family (UPF0370 topsan)  ali follow..  15  16.............................................................................................................................LGMLINGIKELSR-----------------------LDHKRFLHDKPPLPPHRDNNAQWDDEDDWPQKK..................... 61
9 -5.530PF11179.8; A0A0R3NSG9_DROPS/88-947; Protein of unknown function (DUF2967 topsan)  ali follow..  13  525NDSSRTYISPGVSPSNSRRSSPKRDKKRTTPSASTGAIAKVSSAPPTMKDGHFFSASGKQQHQQQHQNQRQTPQQLSPSSSMSAQQRKYSSSSSSGSSTMFPFDREALDHERIQRENRSVYERKLGADIFQQYSRLTQQEQLQQQQQQREWERDRPPSRKNSKR-QYVPQSDAFYPQAKSSSSPSDHSYAELNKFDDIA................ 768
10 -5.410PF16883.5; Q2G176_STAA8/4-200; Domain of unknown function (DUF5080 topsan)  ali follow..  15  40.................................................................................................GITYIFIGDSYDQLTILYMGSLFYAWMAIRNLWNRPLLLKYKNITDSSSGIVNKSNSVESLRINIEIAKYKGIISLIVAIVLTVLMTLKSTPQITAETRDLSILSLFIIIIFA..... 162
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;