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Query: PF15440.6; W5NH69_LEPOC/112-758; THRAP3/BCLAF1 family, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RSRSRSPKRRSTSQRSRSKSHHSARSSASRRSSSSRSSSLYSRSPAPAKSRGSQDKASKKSEGGKEEGSGRQLEEEKGDGKAEQPAIATSAKSDLKRTPAVITESWIGISAYNDTSPHRSPSPIPTPPSQSSSRSDTAAHQVASKISPPSLPALRLHSLQHSPDDPLGHYSPSHDSPPYQTSPRRSPAKAFSTVQSSRGFFPNSDEQDLPKVGKYLKRYTEEDGGRAYLHERGNGRDKEHQKDRLQEKGRGEGDWGDQGGIDPGVKKESEKVPFLGDSPDPEEDESQAYRQPYQFKVTTQAEQVKNYPVESRWNVESQEEGSKYKIKTSKGERDYERFGEDRMFKFKNPGYMLDRLNKDKYGEEGKGTDKYDERITIKRETVSPQQAKAERFRELFDQSPLLQKTLDMREKAALRDESPPRVKIVPGEASRPEVKVKIASLAYDDPSPGTSLTSDRSLASALVHSTKREQGFRSIFDHIKRPQAYKNSAESFIQHIVSLVHHVKEHYFKSTGMSLHERFTAYQKAAEGHEVRQKSPEIHRRIDISPSAFRKDRILKEDSHKGEKKSRCDAADLRHDIDRRRKERSRDRDDSRGSREPSPSRKLDKLGKEFKDYKDYKSYKDDSKHKSKERERSRSSSSSSLSREDNKLast
1 -121.000PF15440.6; W5NH69_LEPOC/112-758; THRAP3/BCLAF1 family  ali  100  1RSRSRSPKRRSTSQRSRSKSHHSARSSASRRSSSSRSSSLYSRSPAPAKSRGSQDKASKKSEGGKEEGSGRQLEEEKGDGKAEQPAIATSAKSDLKRTPAVITESWIGISAYNDTSPHRSPSPIPTPPSQSSSRSDTAAHQVASKISPPSLPALRLHSLQHSPDDPLGHYSPSHDSPPYQTSPRRSPAKAFSTVQSSRGFFPNSDEQDLPKVGKYLKRYTEEDGGRAYLHERGNGRDKEHQKDRLQEKGRGEGDWGDQGGIDPGVKKESEKVPFLGDSPDPEEDESQAYRQPYQFKVTTQAEQVKNYPVESRWNVESQEEGSKYKIKTSKGERDYERFGEDRMFKFKNPGYMLDRLNKDKYGEEGKGTDKYDERITIKRETVSPQQAKAERFRELFDQSPLLQKTLDMREKAALRDESPPRVKIVPGEASRPEVKVKIASLAYDDPSPGTSLTSDRSLASALVHSTKREQGFRSIFDHIKRPQAYKNSAESFIQHIVSLVHHVKEHYFKSTGMSLHERFTAYQKAAEGHEVRQKSPEIHRRIDISPSAFRKDRILKEDSHKGEKKSRCDAADLRHDIDRRRKERSRDRDDSRGSREPSPSRKLDKLGKEFKDYKDYKSYKDDSKHKSKERERSRSSSSSSLSREDNK 647
2 -8.020PF15822.5; A0A2I2Y506_GORGO/5-242; MAPK-interacting and spindle-stabilising protein-like  ali follow..  8  2...SLADALPEHSPAKTSAVSNTKPGQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPPPQAPGAAPPVPWGTVPP..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 192
3 -7.700PF02691.15; VACA3_HELPX/43-1023; Vacuolating cyotoxin  ali follow..  9  798......................................................................................................................................................................................................................................................................................................................................................................................................................................NNTTIAVNLGNNSTPTNSTTDTTNLPTNTTNNARFASYALIKNAPFAHSIESVFELANRSSDIDSHDAGYARTMITSANEITQQ-LNAATTTLNN-IASLEHKTSGLQTLSLSNAMSRLVNLS----RKHT--------------NHIDSFAKRLQALKDQR............................................................... 979
4 -6.870PF03157.13; M8A4Z7_TRIUA/1-833; High molecular weight glutenin subunit  ali follow..  24  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................MTKRLV---------------------------LFAAVVVALV-----------ALTASEGEASGQ--QCERELQEHSLKTCRQVDVSPEC................................................................................................... 58
5 -6.720PF11725.8; Q887C9_PSESM/17-1794; AvrE-family Type-III effector proteins (T3Es)  ali follow..  10  1...TVTPDARAATDLQERAEQPRQRSSHSLSSVGKRALKSVGKQKSKAPQQKAATPPTAKNVKTPPPASNVATPRNKARESGFSNSSPQNTHSAPKSILRNHPNQASSSGAQTHEIHPEAAPRKNLRVRFDLPQDRLERSPSYLDSDNPMTDEEAVANATRQFRSPDSHLQGSDGTRISMLATDPDQPSSSGSKIGDSDGPIPPREPMLWRSNGGRFELKDEKLVRNSEPQGSIQLDAKGKPDFSTFNTPG............................................................................................................................................................................................................................................................................................................................................................................................................ 250
6 -6.370PF10112.9; U5LFW6_9BACI/8-198; 5-bromo-4-chloroindolyl phosphate hydrolysis protein  ali follow..  11  54..............................................................................................................................................................................................................................................................................................................................................................................................................................................................RKHGLSRREYKYIKTNLAEGKKKSRLHKSLFAIRHLPSLKQRIE-LMRITRKIYRLTKKESHLDSLVEMTEKYVFLSTQPKKNLEIDQSLETRRTINELSQTVEK---------DLYEVISDDIDNLNFEID..................................................................... 189
7 -6.210PF15895.5; CXX1_HUMAN/1-209; CAAX box cerebral protein 1  ali follow..  11  19...CSGEGPLCYWPPPGSPPAPSLRASLPLEPPRCPLRSCSLPRSACLCSRNSAPGSCCRPWASLWSEPPPSPSSQPAPPMYIWTLSCAPAASWAPVTHWTDHPLPPLPSPLLPTRLPDDYIILPTDLRCHSHRHPSHPTDRLLLLVIWTHLGGIWAGHSPWTVIQTAGRPPRDLSPSARPISSPPPETSCVLA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 209
8 -6.180PF09843.9; H1Z4F5_9EURY/9-571; Predicted membrane protein (DUF2070 topsan)  ali follow..  9  181..............................................................................................................................................................................................................................................................................................................................................................................................................................................................KKNFNISALNFINAFIAHNTDGSKALETFFREIGEEVYVPQVSLFFKRETVPNLHPGPMGEIGGGNLPLHDSLPGAHGCATHDFNLVSEDEVAKIADAVRKSALGIEYFESAGKSMRFECPGMTEDLDYPIGLAIMAEGHKRFKNVAFVDAHNCMTDVVTSVLPASFTAYEYIRGALSAFEGCSDCGQDEFSIGVCRMDLP 415
9 -6.120PF07964.11; G8JR69_ERECY/11-759; Rec10 / Red1  ali follow..  7  240.LDSSMPLPDDHQPLSDNLGLNLGDEPVVSHNIGEEDIPRQQLSTTQRSGKNPLATPDQTVDKGIAQDLEDEWDLRQSSLATAKLDIHSLKTPTSKEVEIVEDEQSPLVMAQKRRLARATSRTLEALKQEFGVENINSSSQSSDEGTSQHELSESSLSSLEIEKFESRKRTAAQKAAKRVTAALQNTKAASRSSNTNKDNERSAANSNAKAKNKATSAVKGDMGLAALDDIFAIPSIKPKKQQKLNNYKEVVYVPSRDPTNDKGITKKSRVKKKQTALPVKRKHDDGDDATGKDSKAVQRQSFRELTADTDMTVQNKQVSVTPAQEQKDLQTPKTP--EKVNKTRYKRKRVIAKGTAFNLELPSPPPLPLTEKSDTTTSNNLQQPSRNTSMTSIEPLAPGNLTIKNELTESTTLANTSATSLAFSYTNKLQEQIFSSISSFSNDLVKKISIINEENKIVRQF------SEKYQKLFHDLQV-SFQHDVNNMFVSEFKDLLH-IRNKKF........................................................................................................................................... 749
10 -6.000PF11235.8; H3B103_LATCH/224-387; Mediator complex subunit 25 synapsin 1  ali follow..  7  1.GGGATSATQSKQVVPQAPPTVQSQTSLLSTPSQPSQLPPGSAQQVAPPGSLSAAQAAAKMAVEAANSQKPGLATRFFSSAVPNLSQHPNTSGVGPPFSQPPVPTMTPGPISKMPPSTASLIPMTSQASLLPQQQQSQQPSQPSQQPLQPGGVPPGPVNVPQPGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 164
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.